# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2e62A	61	10.52		
1otjA	283	14.93	b.82.2.5	93517
1ea9C	583	23.42	b.1.18.2,b.71.1.1,c.1.8.1	70087,70088,70089
1kd6A	179	23.95	b.97.1.1	68459
1nu5A	370	26.27	c.1.11.2,d.54.1.1	92183,92184
2aaaA	484	28.51	b.71.1.1,c.1.8.1	27777,28764
1gwyA	175	29.12	b.97.1.1	83356
2os5A	119	30.54		
1bplB	294	33.10	b.71.1.1	27716
2guyA	478	35.32	b.71.1.1,c.1.8.1	135754,135755
1iazA	179	35.92	b.97.1.1	62131
1m7xA	617	38.24	b.1.18.2,b.71.1.1,c.1.8.1	78749,78750,78751
1sxjC	340	44.28	a.80.1.1,c.37.1.20	106085,106086
1jaeA	471	44.79	b.71.1.1,c.1.8.1	27773,28760
1g5yA	238	46.27	a.123.1.1	60294
1jdc	429	47.14		
1jdcA	429	48.29	b.71.1.1,c.1.8.1	27789,28776
1a28A	256	51.33	a.123.1.1	19290
1s9pA	227	57.21	a.123.1.1	105384
1jayA	212	57.71	c.2.1.6	66478
1r7aA	504	59.73	b.71.1.1,c.1.8.1	97192,97193
1n5nA	180	63.31	d.167.1.1	85336
1hx0A	496	63.96	b.71.1.1,c.1.8.1	61346,61347
2aaxA	275	66.08		
2aclB	244	68.37		
1ie9A	259	68.66	a.123.1.1	62318
2oocA	113	75.21		
2ze0A	555	76.12		
2q22A	139	76.36		
2r40D	266	82.37		
2pl5A	366	82.49		
1smdA	496	83.00	b.71.1.1,c.1.8.1	27768,28755
1ji2A	585	86.56	b.1.18.2,b.71.1.1,c.1.8.1	71672,71673,71674
1oshA	232	87.57	a.123.1.1	93496