# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1db1A 259 1.548 a.123.1.1 19329 1lmeA 176 1.848 d.167.1.1 84629 1amy 403 3.879 1jdcA 429 4.219 b.71.1.1,c.1.8.1 27789,28776 1ie9A 259 4.448 a.123.1.1 62318 2ghsA 326 4.499 b.68.6.1 135209 1nuiA 255 4.525 e.13.1.2,g.41.3.2 86194,86195 1siqA 392 4.631 a.29.3.1,e.6.1.1 105585,105586 1ua7A 422 5.653 b.71.1.1,c.1.8.1 107759,107760 1jqoA 970 7.622 c.1.12.3 77160 2aaxA 275 9.183 2olnA 397 9.363 2e62A 61 9.393 1v4pA 157 11.11 d.67.1.2 113533 2ptzA 432 11.35 2ffeA 311 11.52 c.143.1.1 133381 1rm6A 769 12.07 d.41.1.1,d.133.1.1 111872,111873 1g3nC 257 12.53 a.74.1.1,a.74.1.1 18366,18367 1e7wA 291 12.60 c.2.1.2 59373 2om6A 235 12.77 2ef0A 301 13.57 2hqyA 305 13.66 2q4aA 330 16.44 b.82.2.8 139839 1jdc 429 16.45 2nruA 307 17.87 1v7oA 165 18.12 d.67.1.2 100480 1obrA 326 19.04 c.56.5.2 33828 1gcyA 527 20.01 b.71.1.1,c.1.8.1 27788,28775 2scpA 174 22.37 a.39.1.5 17256 1s9pA 227 23.31 a.123.1.1 105384 1aye 401 23.33 2hi2A 158 23.80 1a28A 256 26.34 a.123.1.1 19290 1jeqA 609 29.96 a.140.2.1,b.131.1.1,c.62.1.3 64748,90366,90367 3b96A 587 30.13 2o5cA 659 30.15 1r7aA 504 30.35 b.71.1.1,c.1.8.1 97192,97193 2vosA 487 31.03 1n5nA 180 33.24 d.167.1.1 85336 2q22A 139 33.87 1c3pA 375 34.42 c.42.1.2 32606 1ad1A 266 34.68 c.1.21.1 29668 2vlqB 134 37.70 2hbtA 247 39.87 1ef1A 294 40.30 a.11.2.1,b.55.1.5,d.15.1.4 16368,27003,37611 1g33A 73 40.37 a.39.1.4 65121 2d0tA 406 41.18 a.266.1.2 131093 1h7wA 1025 41.24 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 3cq5A 369 41.39 2ef5A 290 42.22 1hniA 558 42.85 c.55.3.1,e.8.1.2 33586,43044 1m2vB 926 43.63 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78497,78498,78499,78500,78501 1k2pA 263 45.24 d.144.1.7 72012 2b7aA 293 45.69 1iazA 179 49.28 b.97.1.1 62131 2aaa 484 49.52 1lylA 504 49.70 b.40.4.1,d.104.1.1 25261,40717 1e4eA 343 51.10 c.30.1.2,d.142.1.1 59221,59222 2g8cO 251 51.26 2os5A 119 51.77 1eyeA 280 52.72 c.1.21.1 29672 2fstX 367 54.10 3dhpA 496 54.26 2p54A 267 54.41 a.123.1.1 139497 1f4qA 165 55.83 a.39.1.8 17360 2i5vO 251 56.19 1smdA 496 56.42 b.71.1.1,c.1.8.1 27768,28755 2qniA 219 57.50 1r30A 369 58.38 c.1.28.1 96895 2e9qA 459 58.39 1kutA 230 59.71 d.143.1.1 73017 1t3cA 421 60.40 d.92.1.7 106343 2nvpA 435 61.54 2f2bA 246 62.24 1u7eB 154 64.16 1g0uG 252 64.25 d.153.1.4 41952 2z69A 154 65.54 1c28A 135 65.96 b.22.1.1 23857 1jakA 512 66.75 c.1.8.6,d.92.2.1 66472,66473 1w63A 618 67.73 i.23.1.1 109192 1wf3A 301 68.15 c.37.1.8,d.52.3.1 114574,114575 2aibA 98 68.98 a.134.1.1 126824 1xiuA 230 69.18 2bfwA 200 70.37 c.87.1.8 128456 1oaaA 259 71.00 c.2.1.2 29829 1a8dA 452 71.32 b.29.1.6,b.42.4.2 24262,25607 1pg5A 299 71.87 c.78.1.1,c.78.1.1 104146,104147 1suwA 249 72.93 e.52.1.1 106027 2cbyA 208 74.08 c.14.1.1 130202 1k20A 310 74.16 c.107.1.1 68027 1qo8A 566 74.42 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 1ayl 541 74.56 2reiA 318 75.15 2hx0A 154 75.56 d.290.1.3 136830 2a19B 284 76.14 3c4zA 543 77.52 2h0qA 261 77.74 2au3A 407 78.04 1sr7A 259 78.23 a.123.1.1 105957 1ut8A 291 78.84 a.60.7.1,c.120.1.2 99908,99909 2at2A 300 79.77 c.78.1.1,c.78.1.1 35196,35197 1gwyA 175 81.17 b.97.1.1 83356 1v33A 366 81.39 d.264.1.1 100278 2bg1A 494 82.88 e.3.1.1 128457 2fphX 165 84.06 3bkbA 377 84.28 2jj7A 186 84.48 1tgoA 773 85.17 c.55.3.5,e.8.1.1 33721,43010 1akaA 401 87.73 c.67.1.1 34258 1u09A 476 88.37 e.8.1.4 107545 2gduA 504 88.69 b.71.1.1,c.1.8.1 135032,135033 1go3F 107 89.40 a.60.8.2 65407 2lbd 267 89.62 2ek0A 90 89.86