# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1otjA	283	7.845	b.82.2.5	93517
2e62A	61	13.21		
1jayA	212	22.44	c.2.1.6	66478
2aaaA	484	23.05	b.71.1.1,c.1.8.1	27777,28764
1ea9C	583	27.71	b.1.18.2,b.71.1.1,c.1.8.1	70087,70088,70089
2guyA	478	28.26	b.71.1.1,c.1.8.1	135754,135755
1kd6A	179	28.34	b.97.1.1	68459
1m7xA	617	30.25	b.1.18.2,b.71.1.1,c.1.8.1	78749,78750,78751
1gwyA	175	30.38	b.97.1.1	83356
1iazA	179	32.88	b.97.1.1	62131
2pl5A	366	34.75		
2q22A	139	37.12		
1oaaA	259	41.41	c.2.1.2	29829
1s9pA	227	49.43	a.123.1.1	105384
1nu5A	370	52.73	c.1.11.2,d.54.1.1	92183,92184
1a28A	256	52.91	a.123.1.1	19290
2zl4A	196	54.08		
1jaeA	471	54.54	b.71.1.1,c.1.8.1	27773,28760
1jdcA	429	55.58	b.71.1.1,c.1.8.1	27789,28776
2aibA	98	57.56	a.134.1.1	126824
2os5A	119	62.16		
2cbyA	208	63.79	c.14.1.1	130202
2z69A	154	66.54		
1gtzA	156	68.21	c.23.13.1	70539
1u7eB	154	68.71		
1sxjC	340	69.86	a.80.1.1,c.37.1.20	106085,106086
1zybA	232	70.09	a.4.5.4,b.82.3.2	125815,125816
1jdc	429	70.70		
2qniA	219	72.91		
1bplB	294	73.65	b.71.1.1	27716
2gauA	232	75.90	a.4.5.4,b.82.3.2	134894,134895
1ie9A	259	82.34	a.123.1.1	62318
1fgkA	310	83.34	d.144.1.7	41693
1rylA	167	83.88	d.276.1.1	105124
3bmvA	683	84.11		
1x54A	434	85.22		
1ayl	541	85.90		
2bj7A	138	86.17	a.43.1.3,d.58.18.4	128608,128609
1u09A	476	86.98	e.8.1.4	107545
2pqqA	149	88.21		
1n5nA	180	89.85	d.167.1.1	85336