# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1m7xA	617	5.843	b.1.18.2,b.71.1.1,c.1.8.1	78749,78750,78751
1otjA	283	8.431	b.82.2.5	93517
2e62A	61	11.35		
1ea9C	583	16.38	b.1.18.2,b.71.1.1,c.1.8.1	70087,70088,70089
1kd6A	179	18.33	b.97.1.1	68459
1gwyA	175	21.18	b.97.1.1	83356
1iazA	179	22.47	b.97.1.1	62131
1hx0A	496	27.07	b.71.1.1,c.1.8.1	61346,61347
1jayA	212	30.23	c.2.1.6	66478
1ehaA	558	32.99	b.1.18.2,b.71.1.1,c.1.8.1	21859,27786,28773
1bplB	294	34.22	b.71.1.1	27716
1eh9A	558	34.74	b.1.18.2,b.71.1.1,c.1.8.1	21858,27785,28772
2guyA	478	36.16	b.71.1.1,c.1.8.1	135754,135755
1jaeA	471	37.04	b.71.1.1,c.1.8.1	27773,28760
1j0mA	752	37.41	a.102.3.2,b.24.1.1,b.30.5.2	83910,83911,83912
2aaaA	484	38.67	b.71.1.1,c.1.8.1	27777,28764
1jdc	429	40.93		
3bmvA	683	42.47		
1jdcA	429	42.78	b.71.1.1,c.1.8.1	27789,28776
2q22A	139	42.88		
1e43A	483	46.84	b.71.1.1,c.1.8.1	59217,59218
1smdA	496	51.33	b.71.1.1,c.1.8.1	27768,28755
1s9pA	227	53.69	a.123.1.1	105384
2pl5A	366	53.87		
2aibA	98	54.26	a.134.1.1	126824
1ji2A	585	58.06	b.1.18.2,b.71.1.1,c.1.8.1	71672,71673,71674
1zybA	232	58.09	a.4.5.4,b.82.3.2	125815,125816
1lmeA	176	58.23	d.167.1.1	84629
3bc9A	599	62.02		
1sxjC	340	63.92	a.80.1.1,c.37.1.20	106085,106086
1n5nA	180	65.86	d.167.1.1	85336
1ie9A	259	67.37	a.123.1.1	62318
1bli	483	72.57		
2os5A	119	77.09		
2qniA	219	82.11		
2zl4A	196	83.01		
2r40D	266	84.50		
1ars	396	87.41		
1wzlA	585	88.88	b.1.18.2,b.71.1.1,c.1.8.1	121513,121514,121515
3dhpA	496	89.72