# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1otjA	283	5.356	b.82.2.5	93517
1m7xA	617	9.714	b.1.18.2,b.71.1.1,c.1.8.1	78749,78750,78751
2e62A	61	11.32		
1gwyA	175	17.55	b.97.1.1	83356
1ea9C	583	17.76	b.1.18.2,b.71.1.1,c.1.8.1	70087,70088,70089
1iazA	179	19.22	b.97.1.1	62131
1ehaA	558	20.25	b.1.18.2,b.71.1.1,c.1.8.1	21859,27786,28773
1kd6A	179	20.37	b.97.1.1	68459
2os5A	119	27.80		
1jayA	212	28.92	c.2.1.6	66478
2q22A	139	31.47		
2guyA	478	32.05	b.71.1.1,c.1.8.1	135754,135755
2aaaA	484	37.02	b.71.1.1,c.1.8.1	27777,28764
1sxjC	340	38.44	a.80.1.1,c.37.1.20	106085,106086
1bplB	294	40.30	b.71.1.1	27716
2pl5A	366	42.64		
1zybA	232	43.81	a.4.5.4,b.82.3.2	125815,125816
2r40D	266	44.49		
1n5nA	180	47.97	d.167.1.1	85336
1u7eB	154	49.30		
1jaeA	471	50.43	b.71.1.1,c.1.8.1	27773,28760
1eh9A	558	50.74	b.1.18.2,b.71.1.1,c.1.8.1	21858,27785,28772
1fgkA	310	51.24	d.144.1.7	41693
2z69A	154	51.35		
1s9pA	227	51.49	a.123.1.1	105384
1lmeA	176	51.75	d.167.1.1	84629
2zl4A	196	56.89		
1jdcA	429	57.83	b.71.1.1,c.1.8.1	27789,28776
1ie9A	259	66.21	a.123.1.1	62318
2qniA	219	66.87		
1g5yA	238	67.96	a.123.1.1	60294
3cjhB	64	68.68		
1smdA	496	69.02	b.71.1.1,c.1.8.1	27768,28755
1rl3A	288	69.23	b.82.3.2,b.82.3.2	104975,104976
1gtzA	156	69.42	c.23.13.1	70539
1rylA	167	71.82	d.276.1.1	105124
2aibA	98	72.25	a.134.1.1	126824
2bj7A	138	72.84	a.43.1.3,d.58.18.4	128608,128609
1j0mA	752	77.98	a.102.3.2,b.24.1.1,b.30.5.2	83910,83911,83912
1e43A	483	79.04	b.71.1.1,c.1.8.1	59217,59218
3bmvA	683	80.20		
1go3F	107	84.29	a.60.8.2	65407
1jdc	429	84.35		
2nvaA	372	85.16		
2d93A	134	85.18		
1k2pA	263	87.66	d.144.1.7	72012
2pqqA	149	89.78