# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2q22A 139 1.484 2it1A 362 9.011 1oxsC 353 11.27 b.40.6.3,c.37.1.12 87519,87520 1fbaA 361 15.53 c.1.10.1 29120 1oxxK 353 15.62 b.40.6.3,c.37.1.12 93715,93716 2couA 109 20.38 1m7sA 484 20.81 e.5.1.1 74574 1qjtA 99 22.07 a.39.1.6 17335 1z7yA 322 23.54 c.79.1.1 124679 1o7fA 469 24.89 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 3bv4A 341 27.89 2i9fA 69 28.18 2hdoA 209 30.36 c.108.1.6 136345 2nq2C 253 33.91 1mdoA 393 36.68 c.67.1.4 79013 1xdzA 240 38.44 c.66.1.20 115196 2zbvA 263 38.73 1cdzA 96 39.33 c.15.1.1 30925 1iuqA 367 45.74 c.112.1.1 90703 1l7vC 249 47.32 c.37.1.12 73674 1tz9A 367 47.62 c.1.15.6 107466 2b9eA 303 48.71 c.66.1.38 128124 1g291 372 49.49 1zaiA 363 49.61 c.1.10.1 124828 2r18A 139 52.59 2hqyA 305 55.17 1hn0A 1021 55.23 a.102.3.2,b.18.1.17,b.24.1.1,b.30.5.2 83616,83617,83618,83619 2pcjA 224 55.85 1u20A 212 56.42 d.113.1.1 119463 3bqsA 93 57.52 1jqhA 308 58.17 d.144.1.7 71793 1s5lU 134 59.17 1y2kA 349 59.95 a.211.1.2 122571 2douA 376 60.02 3b8dA 363 63.70 3cj1A 456 64.76 1k30A 368 64.76 c.112.1.1 68067 1b0uA 262 65.08 c.37.1.12 32370 1o6eA 235 65.98 b.57.1.1 81083 1f5aA 513 69.97 d.58.16.1,a.160.1.1,d.218.1.3 39337,75835,75836 2ff7A 247 70.00 c.37.1.12 133377 1qr0A 228 70.77 d.150.1.1,d.150.1.1 59038,59039 1m85A 484 70.81 e.5.1.1 74578 1z7wA 322 71.11 c.79.1.1 124674 1zklA 353 71.40 1dghB 498 72.09 e.5.1.1 42791 2iskA 230 73.32 1jj2F 119 73.62 d.79.3.1 63091 1bpyA 335 73.75 a.60.6.1,a.60.12.1,d.218.1.2 17980,75819,75820 1x1iA 752 73.76 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 2q3bA 313 74.45 2a8sA 212 74.76 d.113.1.1 126416 1du0A 57 75.23 a.4.1.1 15974 1tbbA 332 77.00 a.211.1.2 106741 1g5bA 221 77.30 d.159.1.3 60261 1jv1A 505 77.99 c.68.1.5 71892 1bk5A 422 78.81 a.118.1.1 19130 1cpt 412 78.92 2bl9A 238 79.65 1svvA 359 80.15 c.67.1.1 106054 2pmkA 243 80.47 1sz9A 144 80.58 a.118.9.4 106139 1th8A 145 81.68 d.122.1.3 106908 1rykA 69 83.82 a.60.11.1 98105 1to6A 371 85.33 c.141.1.1 107170 4crxA 322 86.45 a.60.9.1,d.163.1.1 18095,42155 1g6hA 257 87.20 c.37.1.12 60318 1eupA 403 87.31 a.104.1.1 18967