# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2q22A	139	3.335		
1ctjA	89	4.182	a.3.1.1	15798
2e62A	61	5.976		
1fcyA	236	12.80	a.123.1.1	19282
1cnoA	87	16.47	a.3.1.1	15814
1go3F	107	18.69	a.60.8.2	65407
2j7yA	255	21.44	a.123.1.1	138130
1s9pA	227	22.56	a.123.1.1	105384
2c61A	469	23.83		
3chhA	336	26.45		
3cjhB	64	26.68		
1zp2A	235	26.90		
1t07A	94	28.88	d.279.1.1	106196
2os5A	119	31.31		
2jcdA	345	34.17		
1u7eB	154	36.39		
2ebn	289	37.01		
2g8lA	299	42.24	e.50.1.1	134775
1a17A	166	43.18	a.118.8.1	19206
1jhgA	101	44.56	a.4.12.1	19009
2f2cA	254	47.51	a.74.1.1,a.74.1.1	132805,132806
2aiuA	105	48.30		
1ctj	89	53.13		
2o4aA	93	63.88		
2gpuA	230	64.34	a.123.1.1	135493
3b64A	112	66.16		
1wv9A	94	67.19		
1gdvA	85	68.22	a.3.1.1	60458
1gtzA	156	74.30	c.23.13.1	70539
1uqrA	154	75.29	c.23.13.1	99779
2jd3A	130	77.74		
1s7iA	124	78.00	d.58.4.9	105353
1izmA	184	79.41	a.199.1.1	90725
2i9fA	69	80.56		
1qazA	351	80.59	a.102.3.1	18848
1tzfA	259	81.20	c.68.1.13	107476
1l6xB	34	82.95	k.13.1.1	73644
2bj7A	138	85.09	a.43.1.3,d.58.18.4	128608,128609
2qvpA	275	85.65		
1itxA	419	86.91	c.1.8.5,d.26.3.1	71425,71426
1pzlA	237	87.33	a.123.1.1	104393
2c4wA	176	87.96		
1o7jA	327	88.44	c.88.1.1	81140
2qniA	219	89.34