# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2e62A	61	4.209		
1s9pA	227	4.213	a.123.1.1	105384
1ctjA	89	5.559	a.3.1.1	15798
2j7yA	255	5.631	a.123.1.1	138130
1fcyA	236	6.915	a.123.1.1	19282
2q22A	139	6.976		
3cjhB	64	10.83		
1zp2A	235	16.68		
2gpuA	230	20.99	a.123.1.1	135493
1t07A	94	30.94	d.279.1.1	106196
1cnoA	87	31.23	a.3.1.1	15814
2c61A	469	38.42		
1go3F	107	39.60	a.60.8.2	65407
2aiuA	105	44.38		
2g8lA	299	45.07	e.50.1.1	134775
2qniA	219	47.72		
1u7eB	154	48.88		
2v0vA	194	50.74		
2ebn	289	51.65		
2os5A	119	53.05		
1izmA	184	53.30	a.199.1.1	90725
1n46A	258	54.56	a.123.1.1	85315
1xpcA	248	56.33	a.123.1.1	115738
2h79A	269	61.44		
1qkmA	255	62.93	a.123.1.1	19309
1upvA	257	64.23	a.123.1.1	113398
1pzlA	237	65.50	a.123.1.1	104393
1dunA	134	68.40	b.85.4.1	28371
1a17A	166	71.21	a.118.8.1	19206
2p1tA	240	73.90		
2f2cA	254	74.92	a.74.1.1,a.74.1.1	132805,132806
1ctj	89	75.80		
3chhA	336	78.42		
2pigA	334	80.27		
2v0uA	146	80.61		
1gdvA	85	81.69	a.3.1.1	60458
3b64A	112	84.24		
2ig8A	144	87.02		
1nnhA	294	88.69	d.104.1.1	92005