# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2q22A	139	2.343		
3cjhB	64	3.250		
1zp2A	235	4.785		
2pigA	334	4.995		
2e62A	61	5.059		
1ctjA	89	8.188	a.3.1.1	15798
2ebn	289	9.270		
1s9pA	227	10.48	a.123.1.1	105384
1go3F	107	16.02	a.60.8.2	65407
2g8lA	299	17.61	e.50.1.1	134775
1t07A	94	17.94	d.279.1.1	106196
1fcyA	236	19.39	a.123.1.1	19282
2ywwA	149	19.62		
1ew0A	130	20.72	d.110.3.2	40905
2os5A	119	22.08		
1hn0A	1021	24.26	a.102.3.2,b.18.1.17,b.24.1.1,b.30.5.2	83616,83617,83618,83619
1u7eB	154	26.61		
2sasA	185	31.91	a.39.1.5	17258
2f2cA	254	35.38	a.74.1.1,a.74.1.1	132805,132806
1bcoA	327	36.91	b.48.1.1,c.55.3.3	26431,33676
2j7yA	255	36.93	a.123.1.1	138130
1jhgA	101	37.38	a.4.12.1	19009
2d93A	134	40.15		
3b4uA	294	40.96		
1cnoA	87	41.21	a.3.1.1	15814
1s7iA	124	41.60	d.58.4.9	105353
1zgyA	272	42.91	a.123.1.1	125064
2jd3A	130	42.91		
2d7lA	81	43.28		
2ebnA	289	43.36	c.1.8.5	28990
2v0uA	146	44.83		
2jgzB	260	45.81		
1ctj	89	45.83		
3b64A	112	46.92		
2i9fA	69	47.32		
2o4aA	93	49.97		
2ethA	154	50.38	a.4.5.28	132358
2c61A	469	51.76		
1l6xB	34	52.06	k.13.1.1	73644
3bddA	142	53.28		
2gpuA	230	54.77	a.123.1.1	135493
2idgA	175	55.78		
1dunA	134	58.00	b.85.4.1	28371
2b9sB	62	58.60		
1v9yA	167	59.88	d.110.3.2	108454
3boqA	160	60.05		
2j7tA	302	60.47		
1wv9A	94	60.68		
3ci0K	298	60.80		
2yqzA	263	64.24		
2ogfA	122	66.38		
1x0oA	119	66.51		
1f5qB	252	69.62	a.74.1.1,a.74.1.1	18362,18363
1jlvA	209	71.03	a.45.1.1,c.47.1.5	71729,71730
3cjnA	162	71.96		
1n1jA	93	73.48	a.22.1.3	79813
2aiuA	105	75.29		
2acmA	66	75.78		
1so2A	420	76.52	a.211.1.2	98936
2pezA	179	81.75		
2yukA	90	82.70		
3bpvA	138	82.85		
3b79A	129	84.13		
3b9eA	584	84.81		
3bnyA	320	85.42		
1t15A	214	87.11	c.15.1.3,c.15.1.3	99067,99068
1gdvA	85	87.26	a.3.1.1	60458
3lzt	129	88.80		
1oihA	301	89.40	b.82.2.5	93051