# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2e62A	61	2.259		
1ctjA	89	3.104	a.3.1.1	15798
2q22A	139	4.763		
1fcyA	236	7.308	a.123.1.1	19282
2j7yA	255	9.109	a.123.1.1	138130
1cnoA	87	13.99	a.3.1.1	15814
2jcdA	345	15.96		
3chhA	336	16.35		
1ctj	89	17.04		
1s9pA	227	18.57	a.123.1.1	105384
1t07A	94	19.73	d.279.1.1	106196
3cjhB	64	21.16		
2ebn	289	24.45		
2os5A	119	25.86		
1u7eB	154	28.45		
1f6yA	262	31.01	c.1.21.2	29673
1go3F	107	31.17	a.60.8.2	65407
2c61A	469	31.87		
2qniA	219	32.76		
3b64A	112	33.60		
1jhgA	101	34.23	a.4.12.1	19009
1dunA	134	36.39	b.85.4.1	28371
2qvpA	275	37.94		
2g8lA	299	39.11	e.50.1.1	134775
2gpuA	230	41.76	a.123.1.1	135493
1izmA	184	42.26	a.199.1.1	90725
2ol1A	147	45.21		
3ct2A	382	47.52		
1n46A	258	48.74	a.123.1.1	85315
2h79A	269	49.81		
1hn0A	1021	51.63	a.102.3.2,b.18.1.17,b.24.1.1,b.30.5.2	83616,83617,83618,83619
1zgyA	272	59.14	a.123.1.1	125064
2cpmA	94	59.17		
2v0vA	194	65.56		
1a17A	166	67.72	a.118.8.1	19206
1qazA	351	67.79	a.102.3.1	18848
1gdvA	85	68.75	a.3.1.1	60458
1n1jA	93	69.57	a.22.1.3	79813
1w50A	411	69.58	b.50.1.2	109173
1lv2A	229	70.54	a.123.1.1	78230
1sqnA	261	73.71	a.123.1.1	105944
1pzlA	237	73.83	a.123.1.1	104393
1xpcA	248	74.28	a.123.1.1	115738
2p1tA	240	74.91		
1s7iA	124	80.69	d.58.4.9	105353
1uqrA	154	84.08	c.23.13.1	99779
1nz6A	101	86.44	a.2.3.1	86441
2erwA	56	87.04		
1upvA	257	89.69	a.123.1.1	113398