# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2q22A	139	1.861		
2os5A	119	8.376		
3b64A	112	12.97		
2g8lA	299	19.71	e.50.1.1	134775
2yqzA	263	21.73		
1tbfA	347	21.85	a.211.1.2	106743
2couA	109	22.81		
2p35A	259	22.85		
3cjhB	64	23.17		
1s9pA	227	26.22	a.123.1.1	105384
2opwA	291	26.32		
1z1lA	345	26.51		
2gdgA	114	29.54	d.80.1.3	135015
3ct2A	382	30.53		
1tazA	365	31.54	a.211.1.2	106734
1u7eB	154	32.12		
1s7iA	124	32.21	d.58.4.9	105353
2ousA	331	32.38		
1so2A	420	32.84	a.211.1.2	98936
1pufA	77	35.26	a.4.1.1	95131
1cnoA	87	35.68	a.3.1.1	15814
2ebn	289	36.63		
1iazA	179	37.18	b.97.1.1	62131
2hd1A	326	39.76	a.211.1.2	136338
1uddA	226	40.34	a.132.1.3	107776
2ovyA	362	40.54		
1gd0A	122	40.66	d.80.1.3	39834
1go3F	107	41.69	a.60.8.2	65407
1r1hA	696	45.62	d.92.1.4	104756
1t07A	94	46.69	d.279.1.1	106196
1itxA	419	48.30	c.1.8.5,d.26.3.1	71425,71426
1w50A	411	52.14	b.50.1.2	109173
2q4xA	221	53.33	a.132.1.3	139880
2j7yA	255	53.42	a.123.1.1	138130
1zklA	353	53.95		
2ebnA	289	54.58	c.1.8.5	28990
1cdzA	96	56.71	c.15.1.1	30925
3bqsA	93	58.57		
2inwA	133	61.39	d.110.8.1	137533
1x1iA	752	62.67	a.102.3.2,b.24.1.1,b.30.5.2	121584,121585,121586
1yrnA	61	63.50	a.4.1.1	15981
1uz3A	102	65.79		
1v4pA	157	68.57	d.67.1.2	113533
2qneA	495	69.29		
1lp1A	58	71.27	a.8.1.1	84664
1u00A	227	73.29	a.8.4.1,b.130.1.1	112900,112901
1uw0A	117	74.29	g.39.1.12	108063
1e7uA	961	74.65	a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4	19147,23182,37630,41710
1tyhA	248	75.59	a.132.1.3	107458
1wc1A	226	75.61	d.58.29.1	114492
1y2kA	349	75.84	a.211.1.2	122571
1qwlA	505	75.90	e.5.1.1	96483
2fueA	262	75.92	c.108.1.10	134119
2h79A	269	79.16		
1dkzA	219	80.66	a.8.4.1,b.130.1.1	90345,90346
2hbtA	247	82.26		
1l6xB	34	82.41	k.13.1.1	73644
1h8eA	510	85.47	a.69.1.1,b.49.1.1,c.37.1.11	60738,60739,60740
1hfoA	113	87.68	d.80.1.3	61006
2i9fA	69	89.35