# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2q22A	139	3.420		
1ctjA	89	3.681	a.3.1.1	15798
2e62A	61	5.693		
1cnoA	87	6.207	a.3.1.1	15814
1s9pA	227	14.52	a.123.1.1	105384
1fcyA	236	17.67	a.123.1.1	19282
2j7yA	255	18.40	a.123.1.1	138130
1t07A	94	18.75	d.279.1.1	106196
1u7eB	154	21.85		
3cjhB	64	23.19		
1zp2A	235	29.83		
2ebn	289	32.19		
2os5A	119	33.17		
2g8lA	299	34.11	e.50.1.1	134775
1jhgA	101	35.56	a.4.12.1	19009
2c61A	469	35.90		
1ctj	89	36.99		
3chhA	336	38.58		
1hn0A	1021	41.35	a.102.3.2,b.18.1.17,b.24.1.1,b.30.5.2	83616,83617,83618,83619
2gpuA	230	42.80	a.123.1.1	135493
1yifA	533	42.89	b.29.1.23,b.67.2.1	123283,123284
2pigA	334	49.40		
2qvpA	275	51.19		
1go3F	107	54.98	a.60.8.2	65407
2aiuA	105	61.71		
3bjuA	521	65.39		
1jlvA	209	66.51	a.45.1.1,c.47.1.5	71729,71730
1f6yA	262	67.14	c.1.21.2	29673
1gdvA	85	70.25	a.3.1.1	60458
3ct2A	382	77.14		
2erwA	56	77.75		
1zgyA	272	78.57	a.123.1.1	125064
1w50A	411	80.03	b.50.1.2	109173
2o5cA	659	80.11		
1lr7A	74	80.76	g.3.11.3,g.68.1.1	84679,84680
1n1jA	93	83.44	a.22.1.3	79813
1oihA	301	83.64	b.82.2.5	93051
2qniA	219	84.70		
1itxA	419	84.84	c.1.8.5,d.26.3.1	71425,71426
2ebnA	289	85.61	c.1.8.5	28990
1dunA	134	88.93	b.85.4.1	28371