# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2p8bA 369 1.462 1ie9A 259 2.307 a.123.1.1 62318 1sqnA 261 2.836 a.123.1.1 105944 2q4aA 330 3.065 b.82.2.8 139839 1tcaA 317 3.757 c.69.1.17 34726 2aaxA 275 3.991 2qz7A 194 4.371 1ctjA 89 5.891 a.3.1.1 15798 1v4pA 157 6.200 d.67.1.2 113533 1s9pA 227 6.379 a.123.1.1 105384 2q22A 139 6.750 2ef0A 301 6.830 1siqA 392 9.269 a.29.3.1,e.6.1.1 105585,105586 1nnhA 294 11.10 d.104.1.1 92005 2olnA 397 12.10 1gcyA 527 12.28 b.71.1.1,c.1.8.1 27788,28775 1cnoA 87 12.28 a.3.1.1 15814 1jqoA 970 14.73 c.1.12.3 77160 2gpuA 230 16.59 a.123.1.1 135493 2e62A 61 18.26 1oihA 301 18.42 b.82.2.5 93051 1n46A 258 19.92 a.123.1.1 85315 1jmxA 494 20.29 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 1go3F 107 20.51 a.60.8.2 65407 2ptzA 432 20.74 1f6yA 262 21.42 c.1.21.2 29673 1o75A 415 22.24 b.1.20.1,b.1.20.1,b.120.1.1 81117,81118,81119 2hpkA 208 22.63 2v7kA 361 22.76 2fphX 165 24.28 1ctj 89 25.10 3b96A 587 25.28 2qvpA 275 27.30 1ov2A 99 27.60 a.13.1.1 93580 1zj8A 566 28.30 2o5cA 659 29.01 3c4zA 543 29.43 2ha9A 446 31.93 2qg7A 458 32.08 1z15A 344 32.31 2dkfA 431 32.71 3lzt 129 33.75 3c3pA 210 34.45 2puzA 419 35.15 1quuA 250 35.70 a.7.1.1,a.7.1.1 16320,16321 1dtdA 303 35.74 c.56.5.1 33823 1rm6A 769 35.84 d.41.1.1,d.133.1.1 111872,111873 1jhgA 101 35.86 a.4.12.1 19009 1u7eB 154 36.00 2ousA 331 36.76 2z43A 324 36.77 1h2wA 710 38.59 b.69.7.1,c.69.1.4 76596,76597 3cjhB 64 38.76 1obrA 326 39.05 c.56.5.2 33828 1zp2A 235 39.34 1fecA 490 39.66 c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 1e7wA 291 40.28 c.2.1.2 59373 2jfkA 433 40.40 2os5A 119 41.56 2q4gW 461 42.75 c.10.1.1 139849 1sh0A 510 42.89 e.8.1.4 98876 2atzA 180 43.49 d.264.1.3 127317 1dd9A 338 47.60 e.13.1.1 43254 1m4lA 307 48.45 c.56.5.1 78604 1jdc 429 48.60 1c93A 265 48.96 c.1.8.5 28998 1xnzA 264 49.74 d.127.1.1 115673 1t07A 94 50.32 d.279.1.1 106196 2sasA 185 51.42 a.39.1.5 17258 2ch5A 347 52.76 c.55.1.5,c.55.1.5 130453,130454 2r19A 159 53.78 2hi2A 158 55.93 1ia6A 441 57.06 a.102.1.2 76738 3ci0K 298 58.63 2v3vA 723 59.13 2eb0A 307 59.65 1in4A 334 60.26 a.4.5.11,c.37.1.20 62597,62598 1jdcA 429 61.63 b.71.1.1,c.1.8.1 27789,28776 1y08A 323 61.67 d.3.1.12 116280 2ef5A 290 61.89 1o7nB 194 62.41 d.17.4.4 81164 1zvdA 380 63.51 1xcrA 316 64.61 d.290.1.2 121860 1jlvA 209 65.58 a.45.1.1,c.47.1.5 71729,71730 3cz8A 319 66.41 2iu5A 195 66.48 1suwA 249 67.40 e.52.1.1 106027 3cqyA 370 68.47 2qh8A 302 71.43 1vjpA 394 71.49 c.2.1.3,d.81.1.3 100828,100829 1qh4A 380 72.40 a.83.1.1,d.128.1.2 18462,41197 2avwA 311 72.82 2gxaA 274 73.15 1ftrA 296 73.75 d.58.33.1,d.58.33.1 39485,39486 2r6fA 972 73.88 1mucA 373 74.42 c.1.11.2,d.54.1.1 29236,38880 1upvA 257 74.85 a.123.1.1 113398 1lj2A 110 75.58 h.1.13.2 73926 1zsoA 164 76.60 b.166.1.1 125610 2p1tA 240 77.82 1c3pA 375 77.84 c.42.1.2 32606 3b64A 112 77.85 1tkiA 321 79.62 d.144.1.7 41638 2nwdX 130 79.96 d.2.1.2 138718 1tf1A 198 80.91 d.110.2.2 106826 2pgeA 377 84.08 2pmlX 348 84.41 1sznA 417 84.47 b.71.1.1,c.1.8.1 106162,106163 3c0wA 235 85.22 1x19A 359 85.67 1ugpA 203 86.79 d.149.1.1 107831 1e6wA 260 87.03 c.2.1.2 59326 1kutA 230 87.09 d.143.1.1 73017 2gduA 504 87.14 b.71.1.1,c.1.8.1 135032,135033 1r7aA 504 88.19 b.71.1.1,c.1.8.1 97192,97193 2aiuA 105 88.64