# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2q22A	139	3.061		
1ctjA	89	5.531	a.3.1.1	15798
2e62A	61	5.648		
1fcyA	236	8.473	a.123.1.1	19282
1cnoA	87	9.005	a.3.1.1	15814
1zp2A	235	14.49		
1t07A	94	15.03	d.279.1.1	106196
1s9pA	227	15.96	a.123.1.1	105384
2j7yA	255	17.31	a.123.1.1	138130
2os5A	119	17.81		
2ebn	289	19.64		
3cjhB	64	22.94		
1jhgA	101	26.23	a.4.12.1	19009
2g8lA	299	28.40	e.50.1.1	134775
1u7eB	154	29.34		
2qvpA	275	40.26		
1go3F	107	42.41	a.60.8.2	65407
2gpuA	230	43.14	a.123.1.1	135493
1ctj	89	44.75		
2aiuA	105	47.43		
1hn0A	1021	48.41	a.102.3.2,b.18.1.17,b.24.1.1,b.30.5.2	83616,83617,83618,83619
3chhA	336	49.99		
2ebnA	289	54.51	c.1.8.5	28990
2pigA	334	55.36		
1zgyA	272	56.30	a.123.1.1	125064
1c93A	265	60.73	c.1.8.5	28998
3b64A	112	62.31		
1upvA	257	62.90	a.123.1.1	113398
3bjuA	521	64.07		
1n1jA	93	66.63	a.22.1.3	79813
3ct2A	382	68.57		
1dunA	134	71.87	b.85.4.1	28371
1itxA	419	73.10	c.1.8.5,d.26.3.1	71425,71426
2v0vA	194	76.41		
1gdvA	85	78.33	a.3.1.1	60458
2o5cA	659	79.33		
1n46A	258	80.27	a.123.1.1	85315
1oihA	301	83.41	b.82.2.5	93051
2c61A	469	84.17		
1yifA	533	84.29	b.29.1.23,b.67.2.1	123283,123284
1goiA	499	87.93	b.72.2.1,c.1.8.5,d.26.3.1	65413,65414,65415
2bhuA	602	88.28	b.1.18.2,b.71.1.1,c.1.8.1	128554,128555,128556
2i9fA	69	88.34		
1jlvA	209	89.18	a.45.1.1,c.47.1.5	71729,71730