# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2q22A	139	2.572		
2e62A	61	3.866		
1ctjA	89	4.962	a.3.1.1	15798
3cjhB	64	6.130		
1fcyA	236	7.350	a.123.1.1	19282
1cnoA	87	9.821	a.3.1.1	15814
1s9pA	227	10.83	a.123.1.1	105384
2ebn	289	17.12		
2j7yA	255	18.79	a.123.1.1	138130
2c61A	469	18.97		
1t07A	94	19.38	d.279.1.1	106196
1hn0A	1021	22.75	a.102.3.2,b.18.1.17,b.24.1.1,b.30.5.2	83616,83617,83618,83619
1zp2A	235	23.80		
1a17A	166	25.22	a.118.8.1	19206
1u7eB	154	29.26		
3bc9A	599	33.42		
1go3F	107	33.94	a.60.8.2	65407
2g8lA	299	35.62	e.50.1.1	134775
1ctj	89	36.98		
3chhA	336	38.19		
2gpuA	230	39.59	a.123.1.1	135493
2h79A	269	40.29		
2pigA	334	41.35		
2ebnA	289	41.83	c.1.8.5	28990
2os5A	119	50.90		
1w50A	411	50.99	b.50.1.2	109173
1n46A	258	51.57	a.123.1.1	85315
1dunA	134	51.78	b.85.4.1	28371
2di4A	238	53.62	a.269.1.1	131522
1f6yA	262	56.06	c.1.21.2	29673
1jhgA	101	58.78	a.4.12.1	19009
1nnhA	294	63.38	d.104.1.1	92005
2bhuA	602	66.02	b.1.18.2,b.71.1.1,c.1.8.1	128554,128555,128556
2aiuA	105	69.04		
1s7iA	124	69.42	d.58.4.9	105353
2qvpA	275	72.06		
2jcdA	345	72.24		
1gdvA	85	72.48	a.3.1.1	60458
2qniA	219	74.80		
1wv9A	94	79.28		
1nz6A	101	81.83	a.2.3.1	86441
1pzlA	237	84.44	a.123.1.1	104393
1ugpA	203	84.72	d.149.1.1	107831
3bnyA	320	86.39		
2p1tA	240	87.20