# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2q22A	139	4.709		
1fcyA	236	6.043	a.123.1.1	19282
1ctjA	89	8.173	a.3.1.1	15798
2e62A	61	8.531		
3cjhB	64	8.573		
2j7yA	255	8.575	a.123.1.1	138130
1s9pA	227	10.71	a.123.1.1	105384
1cnoA	87	16.56	a.3.1.1	15814
1t07A	94	19.34	d.279.1.1	106196
2c61A	469	22.48		
1zp2A	235	27.43		
2ebn	289	28.06		
1go3F	107	28.28	a.60.8.2	65407
1w50A	411	29.24	b.50.1.2	109173
1hn0A	1021	32.09	a.102.3.2,b.18.1.17,b.24.1.1,b.30.5.2	83616,83617,83618,83619
2gpuA	230	34.90	a.123.1.1	135493
2os5A	119	35.72		
2pigA	334	36.77		
2ol1A	147	38.01		
2g8lA	299	46.49	e.50.1.1	134775
2v0vA	194	47.26		
1u7eB	154	47.97		
1dunA	134	49.86	b.85.4.1	28371
2di4A	238	51.23	a.269.1.1	131522
1xpcA	248	51.63	a.123.1.1	115738
2ebnA	289	54.11	c.1.8.5	28990
1a17A	166	54.49	a.118.8.1	19206
1n46A	258	54.62	a.123.1.1	85315
1upvA	257	57.16	a.123.1.1	113398
2qvpA	275	58.19		
1zgyA	272	58.40	a.123.1.1	125064
1s7iA	124	60.12	d.58.4.9	105353
2aiuA	105	61.96		
2d93A	134	65.86		
2cpmA	94	69.79		
1nz6A	101	72.42	a.2.3.1	86441
3chhA	336	72.45		
1ctj	89	74.40		
2jcdA	345	83.68		
1iazA	179	83.76	b.97.1.1	62131
2h79A	269	85.20		
2jd3A	130	85.59		
1wv9A	94	88.12		
1jlvA	209	89.10	a.45.1.1,c.47.1.5	71729,71730
2d7lA	81	89.57