Best Alignments for T0489

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1nq7A	3.4547e+00	1nq7A/T0489-1nq7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.123.1.1
1fcyA	4.7863e+00	1fcyA/T0489-1fcyA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.123.1.1
2gpuA	4.9323e+00	2gpuA/T0489-2gpuA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.123.1.1
1zgyA	4.9583e+00	1zgyA/T0489-1zgyA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.123.1.1
2e62A	5.4000e+00	2e62A/T0489-2e62A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1n83A	5.6980e+00	1n83A/T0489-1n83A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.123.1.1
1t7rA	7.1121e+00	1t7rA/T0489-1t7rA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.123.1.1
1pq9A	7.7063e+00	1pq9A/T0489-1pq9A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.123.1.1
2q22A	8.8065e+00	2q22A/T0489-2q22A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1pzlA	9.5409e+00	1pzlA/T0489-1pzlA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.123.1.1
1nrlA	9.7445e+00	1nrlA/T0489-1nrlA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.123.1.1
1upvA	9.7853e+00	1upvA/T0489-1upvA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.123.1.1
2ax6A	1.0037e+01	2ax6A/T0489-2ax6A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.123.1.1
1n46A	1.0565e+01	1n46A/T0489-1n46A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.123.1.1
1xpcA	1.0842e+01	1xpcA/T0489-1xpcA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.123.1.1
3ertA	1.2455e+01	3ertA/T0489-3ertA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.123.1.1
2ax9A	1.4042e+01	2ax9A/T0489-2ax9A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.123.1.1
2aaxA	1.4917e+01	2aaxA/T0489-2aaxA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ax8A	1.4940e+01	2ax8A/T0489-2ax8A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1qkmA	1.6345e+01	1qkmA/T0489-1qkmA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.123.1.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001