# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2gdrA	202	4.298		
1nq7A	244	4.441	a.123.1.1	92047
2q22A	139	4.655		
2gpuA	230	5.277	a.123.1.1	135493
2e62A	61	5.697		
1zgyA	272	6.901	a.123.1.1	125064
1qkmA	255	8.989	a.123.1.1	19309
1pq9A	253	10.73	a.123.1.1	95004
1n83A	270	11.17	a.123.1.1	80276
1pzlA	237	11.19	a.123.1.1	104393
1ovlA	271	11.32	a.123.1.1	87455
1ctjA	89	11.66	a.3.1.1	15798
1fcyA	236	11.81	a.123.1.1	19282
1upvA	257	13.53	a.123.1.1	113398
1xpcA	248	16.49	a.123.1.1	115738
3cjhB	64	16.78		
2ebn	289	19.60		
2ntoA	201	20.02		
2g8lA	299	20.33	e.50.1.1	134775
1gdvA	85	21.49	a.3.1.1	60458
1nrlA	316	21.60	a.123.1.1	92091
1t07A	94	22.62	d.279.1.1	106196
3ertA	261	24.58	a.123.1.1	19292
1n46A	258	31.43	a.123.1.1	85315
1t7rA	269	32.10	a.123.1.1	106635
2nqtA	352	32.56		
2cz2A	223	32.57		
2ebnA	289	33.38	c.1.8.5	28990
3ct2A	382	34.32		
1kagA	173	35.10	c.37.1.2	72249
1n2aA	201	37.06	a.45.1.1,c.47.1.5	91553,91554
2ax6A	256	38.06	a.123.1.1	127479
2pmiB	293	38.69		
1jlwA	219	39.33	a.45.1.1,c.47.1.5	71741,71742
1ogoX	574	40.10	b.133.1.1,b.80.1.10	92925,92926
1ctj	89	41.23		
1owqA	361	41.29	c.1.8.5,d.26.3.1	104041,104042
2pt5A	168	42.41		
1a0fA	201	44.60	a.45.1.1,c.47.1.5	17737,33031
2ax8A	256	45.12		
3b9eA	584	46.69		
3c5tA	122	46.89		
1jalA	363	47.98	c.37.1.8,d.15.10.2	84138,84139
2aaxA	275	50.21		
1goiA	499	52.21	b.72.2.1,c.1.8.5,d.26.3.1	65413,65414,65415
1vf8A	377	56.47	c.1.8.5,d.26.3.1	120029,120030
2aiuA	105	58.48		
1ymtA	246	58.74		
1e6pA	499	59.72	b.72.2.1,c.1.8.5,d.26.3.1	59314,59315,59316
1rl4A	188	60.50	d.167.1.1	97636
1jlvA	209	62.40	a.45.1.1,c.47.1.5	71729,71730
1jdc	429	62.50		
2hzlA	365	70.21		
2o37A	92	70.91		
1pk5A	248	74.50	a.123.1.1	88139
2uz8A	174	75.19		
1e9lA	377	77.41	c.1.8.5,d.26.3.1	59395,59396
3cu3A	172	78.21		
1vqoD	177	79.41	d.77.1.1	120365
1z5rA	306	79.53	c.56.5.1	124488
1edtA	271	82.19	c.1.8.5	28993
2qk2A	242	84.05		
1s9pA	227	84.42	a.123.1.1	105384