# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gdrA 202 1.284 1zgyA 272 1.807 a.123.1.1 125064 2gpuA 230 4.706 a.123.1.1 135493 2ebn 289 4.835 2q22A 139 4.954 2cz2A 223 5.917 2e62A 61 7.709 3cjhB 64 8.021 1kagA 173 8.151 c.37.1.2 72249 1nq7A 244 9.900 a.123.1.1 92047 2ntoA 201 10.50 1fcyA 236 11.33 a.123.1.1 19282 1t7rA 269 11.60 a.123.1.1 106635 2ebnA 289 11.87 c.1.8.5 28990 2g8lA 299 11.93 e.50.1.1 134775 1njgA 250 12.47 c.37.1.20 85785 1jlwA 219 12.94 a.45.1.1,c.47.1.5 71741,71742 1ymtA 246 14.47 2ax6A 256 15.03 a.123.1.1 127479 1ctjA 89 17.17 a.3.1.1 15798 2aaxA 275 17.55 1t07A 94 18.19 d.279.1.1 106196 1vf8A 377 19.75 c.1.8.5,d.26.3.1 120029,120030 1owqA 361 19.96 c.1.8.5,d.26.3.1 104041,104042 1n83A 270 20.83 a.123.1.1 80276 1wpoA 256 21.45 b.57.1.1 27012 1upvA 257 21.89 a.123.1.1 113398 1goiA 499 21.95 b.72.2.1,c.1.8.5,d.26.3.1 65413,65414,65415 1jlvA 209 23.01 a.45.1.1,c.47.1.5 71729,71730 1e9lA 377 23.49 c.1.8.5,d.26.3.1 59395,59396 1pzlA 237 24.39 a.123.1.1 104393 2ax8A 256 24.75 3b9eA 584 25.01 2fuqA 747 26.61 2pmiB 293 26.62 1a0fA 201 26.89 a.45.1.1,c.47.1.5 17737,33031 1pq9A 253 27.19 a.123.1.1 95004 2ou3A 161 27.33 1w9pA 433 27.48 c.1.8.5,d.26.3.1 114412,114413 2jd3A 130 28.00 1ew0A 130 28.22 d.110.3.2 40905 1f2eA 201 29.87 a.45.1.1,c.47.1.5 17745,33039 1edtA 271 31.94 c.1.8.5 28993 2e7uA 424 32.26 1hjxA 362 33.19 c.1.8.5,d.26.3.1 83512,83513 1n2aA 201 33.43 a.45.1.1,c.47.1.5 91553,91554 1ovlA 271 34.58 a.123.1.1 87455 1e6pA 499 34.71 b.72.2.1,c.1.8.5,d.26.3.1 59314,59315,59316 1gwyA 175 34.93 b.97.1.1 83356 1v9yA 167 35.25 d.110.3.2 108454 1gdvA 85 36.09 a.3.1.1 60458 2jgzB 260 36.16 1go3F 107 37.48 a.60.8.2 65407 1iazA 179 39.07 b.97.1.1 62131 1hkkA 364 40.16 c.1.8.5,d.26.3.1 90634,90635 1u7eB 154 43.90 1n46A 258 45.19 a.123.1.1 85315 1xpcA 248 46.49 a.123.1.1 115738 2pigA 334 47.07 2ax9A 256 49.26 a.123.1.1 127481 2b02A 119 49.87 2ywwA 149 50.38 1d2kA 392 51.52 c.1.8.5,d.26.3.1 29008,38442 4crxA 322 52.44 a.60.9.1,d.163.1.1 18095,42155 1hg4A 279 54.09 a.123.1.1 19333 1rl4A 188 54.73 d.167.1.1 97636 1ll7A 392 55.93 c.1.8.5,d.26.3.1 78085,78086 17gsA 210 56.87 a.45.1.1,c.47.1.5 17524,32818 2fsaA 174 59.24 2pqqA 149 60.34 2i9fA 69 60.69 1fw1A 216 62.81 a.45.1.1,c.47.1.5 60051,60052 2pvqA 201 62.81 3cz8A 319 64.51 2hnlA 225 67.27 1miwA 404 68.36 a.173.1.1,d.218.1.4 79162,79163 1sh0A 510 69.11 e.8.1.4 98876 1nrlA 316 69.23 a.123.1.1 92091 1fipA 98 69.26 a.4.1.12 18980 3bddA 142 69.57 2chgA 226 70.62 1l6xB 34 71.33 k.13.1.1 73644 2jdxA 385 71.68 d.126.1.2 41139 1v2aA 210 71.76 a.45.1.1,c.47.1.5 100263,100264 3ertA 261 72.43 a.123.1.1 19292 1c93A 265 73.40 c.1.8.5 28998 2idgA 175 74.07 1jdc 429 74.41 1e29A 135 75.72 a.3.1.1 59161 2ogfA 122 76.98 3bsoA 510 77.08 1ne6A 283 77.28 b.82.3.2,b.82.3.2 91831,91832 1mixA 206 77.87 a.11.2.1,b.55.1.5 79166,79167 2aclB 244 81.37 1f44A 324 81.55 a.60.9.1,d.163.1.1 64982,64983 3ct2A 382 83.05 2couA 109 83.50 3bpvA 138 85.88 2yukA 90 86.00 1auiB 169 86.07 a.39.1.5 17325 2d93A 134 86.88 1lnwA 147 88.11 a.4.5.28 78104 1ctj 89 88.48 3b64A 112 88.54 1vrpA 381 89.16 a.83.1.1,d.128.1.2 120473,120474 2q4gW 461 89.44 c.10.1.1 139849