# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2e62A	61	1.941		
1zgyA	272	5.520	a.123.1.1	125064
1nq7A	244	7.730	a.123.1.1	92047
1fcyA	236	7.799	a.123.1.1	19282
2q22A	139	8.159		
1dunA	134	9.129	b.85.4.1	28371
2gdrA	202	9.565		
1ctjA	89	11.37	a.3.1.1	15798
3ct2A	382	13.64		
2gpuA	230	14.21	a.123.1.1	135493
1nrlA	316	18.07	a.123.1.1	92091
3c5tA	122	19.40		
2ax6A	256	21.30	a.123.1.1	127479
1jdc	429	22.11		
2ax9A	256	22.44	a.123.1.1	127481
1t07A	94	22.46	d.279.1.1	106196
2e7uA	424	23.87		
1n83A	270	24.16	a.123.1.1	80276
1pzlA	237	25.35	a.123.1.1	104393
1upvA	257	26.45	a.123.1.1	113398
1pq9A	253	26.80	a.123.1.1	95004
3cjhB	64	27.24		
1gwyA	175	27.81	b.97.1.1	83356
1njgA	250	28.84	c.37.1.20	85785
1xpcA	248	29.03	a.123.1.1	115738
2cpmA	94	29.36		
1n46A	258	29.43	a.123.1.1	85315
1kagA	173	29.60	c.37.1.2	72249
2ntoA	201	30.36		
1z5rA	306	30.57	c.56.5.1	124488
1t7rA	269	30.57	a.123.1.1	106635
1qkmA	255	31.23	a.123.1.1	19309
2ax8A	256	33.43		
2ebn	289	33.64		
1ctj	89	37.47		
1ovlA	271	38.41	a.123.1.1	87455
1iazA	179	38.45	b.97.1.1	62131
2aaxA	275	39.79		
1h32A	261	46.84	a.3.1.8,a.3.1.8	76618,76619
2pt5A	168	48.64		
2hktA	172	49.21		
2ol1A	147	52.43		
1vf8A	377	53.83	c.1.8.5,d.26.3.1	120029,120030
1ogoX	574	54.85	b.133.1.1,b.80.1.10	92925,92926
1n6aA	259	57.62	b.76.2.1,b.85.7.1	80121,80122
2ebnA	289	60.10	c.1.8.5	28990
1pk5A	248	63.02	a.123.1.1	88139
2cz2A	223	65.42		
3ertA	261	66.47	a.123.1.1	19292
1qf6A	642	66.83	c.51.1.1,d.15.10.1,d.67.1.1,d.104.1.1	33210,39551,39562,40759
3b64A	112	70.42		
1n2aA	201	71.20	a.45.1.1,c.47.1.5	91553,91554
1nz6A	101	74.37	a.2.3.1	86441
1gdvA	85	74.71	a.3.1.1	60458
1jlwA	219	75.20	a.45.1.1,c.47.1.5	71741,71742
2ou3A	161	76.88		
2g8lA	299	81.68	e.50.1.1	134775
1e6pA	499	82.90	b.72.2.1,c.1.8.5,d.26.3.1	59314,59315,59316
1e9lA	377	83.99	c.1.8.5,d.26.3.1	59395,59396
1hg4A	279	85.24	a.123.1.1	19333
1fipA	98	87.42	a.4.1.12	18980
1rqbA	539	88.95	a.5.7.2,c.1.10.5	105057,105058