# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2e62A 61 2.119 1zgyA 272 4.514 a.123.1.1 125064 1fcyA 236 4.780 a.123.1.1 19282 1nq7A 244 4.883 a.123.1.1 92047 2gdrA 202 7.639 2gpuA 230 7.908 a.123.1.1 135493 1nrlA 316 8.272 a.123.1.1 92091 2q22A 139 8.869 1upvA 257 9.575 a.123.1.1 113398 3ct2A 382 9.834 1ctjA 89 10.91 a.3.1.1 15798 1pq9A 253 13.06 a.123.1.1 95004 3c5tA 122 13.45 1t07A 94 14.82 d.279.1.1 106196 1n83A 270 15.98 a.123.1.1 80276 2ax6A 256 16.56 a.123.1.1 127479 1n46A 258 16.74 a.123.1.1 85315 2ax9A 256 17.99 a.123.1.1 127481 1dunA 134 20.35 b.85.4.1 28371 1xpcA 248 20.52 a.123.1.1 115738 2ebn 289 21.73 1gwyA 175 21.75 b.97.1.1 83356 1pzlA 237 22.38 a.123.1.1 104393 1t7rA 269 22.83 a.123.1.1 106635 2ntoA 201 25.11 2cpmA 94 25.16 2ax8A 256 25.33 1qkmA 255 26.11 a.123.1.1 19309 3cjhB 64 26.29 2aaxA 275 27.24 1njgA 250 27.93 c.37.1.20 85785 1ctj 89 28.60 1ovlA 271 29.30 a.123.1.1 87455 2aclB 244 29.91 1iazA 179 32.82 b.97.1.1 62131 2g8lA 299 33.27 e.50.1.1 134775 1z5rA 306 35.99 c.56.5.1 124488 1vf8A 377 38.42 c.1.8.5,d.26.3.1 120029,120030 1ogoX 574 38.45 b.133.1.1,b.80.1.10 92925,92926 2ebnA 289 40.60 c.1.8.5 28990 2e7uA 424 47.72 1jdc 429 48.04 1e9lA 377 48.13 c.1.8.5,d.26.3.1 59395,59396 1e6pA 499 48.66 b.72.2.1,c.1.8.5,d.26.3.1 59314,59315,59316 1gdvA 85 50.20 a.3.1.1 60458 1kagA 173 50.72 c.37.1.2 72249 1xiuA 230 51.87 1pk5A 248 53.42 a.123.1.1 88139 3bsoA 510 56.58 3ertA 261 57.17 a.123.1.1 19292 1goiA 499 58.34 b.72.2.1,c.1.8.5,d.26.3.1 65413,65414,65415 2cz2A 223 58.71 2ou3A 161 58.85 1go3F 107 60.83 a.60.8.2 65407 1hg4A 279 61.11 a.123.1.1 19333 2h79A 269 63.04 1edtA 271 64.22 c.1.8.5 28993 1h32A 261 65.37 a.3.1.8,a.3.1.8 76618,76619 1n2aA 201 68.21 a.45.1.1,c.47.1.5 91553,91554 1sr7A 259 71.21 a.123.1.1 105957 3b64A 112 72.61 1ymtA 246 73.72 1qf6A 642 75.09 c.51.1.1,d.15.10.1,d.67.1.1,d.104.1.1 33210,39551,39562,40759 1rqbA 539 75.32 a.5.7.2,c.1.10.5 105057,105058 2hzlA 365 76.86 1nz6A 101 76.87 a.2.3.1 86441 1vqoD 177 79.57 d.77.1.1 120365 1jalA 363 82.08 c.37.1.8,d.15.10.2 84138,84139 2o37A 92 82.52 1jlwA 219 85.23 a.45.1.1,c.47.1.5 71741,71742 1w9pA 433 86.53 c.1.8.5,d.26.3.1 114412,114413 1hkkA 364 86.71 c.1.8.5,d.26.3.1 90634,90635