# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2q22A 139 2.642 2g8lA 299 9.894 e.50.1.1 134775 2ebn 289 11.04 1goiA 499 12.61 b.72.2.1,c.1.8.5,d.26.3.1 65413,65414,65415 3ct2A 382 14.24 1vf8A 377 18.50 c.1.8.5,d.26.3.1 120029,120030 1iazA 179 20.59 b.97.1.1 62131 1ogoX 574 21.58 b.133.1.1,b.80.1.10 92925,92926 2p35A 259 22.22 1e9lA 377 22.49 c.1.8.5,d.26.3.1 59395,59396 1tbfA 347 23.09 a.211.1.2 106743 2couA 109 23.51 3b64A 112 26.09 2ebnA 289 26.28 c.1.8.5 28990 1t07A 94 27.48 d.279.1.1 106196 1uz3A 102 27.62 1t7rA 269 28.13 a.123.1.1 106635 1hjxA 362 29.36 c.1.8.5,d.26.3.1 83512,83513 1hkkA 364 29.58 c.1.8.5,d.26.3.1 90634,90635 2os5A 119 30.63 3cjhB 64 32.57 1rkpA 326 33.14 a.211.1.2 97620 1owqA 361 33.39 c.1.8.5,d.26.3.1 104041,104042 1w9pA 433 34.39 c.1.8.5,d.26.3.1 114412,114413 1gwyA 175 35.26 b.97.1.1 83356 1wb0A 445 37.19 c.1.8.5,d.26.3.1 120825,120826 1zklA 353 38.96 2ovyA 362 40.15 1nq7A 244 41.54 a.123.1.1 92047 2gdgA 114 41.65 d.80.1.3 135015 2ousA 331 42.06 2ax8A 256 42.18 1gd0A 122 42.70 d.80.1.3 39834 1r1hA 696 43.69 d.92.1.4 104756 1z1lA 345 44.00 1e6pA 499 44.13 b.72.2.1,c.1.8.5,d.26.3.1 59314,59315,59316 1cdzA 96 44.13 c.15.1.1 30925 2aaxA 275 44.55 2gpuA 230 44.80 a.123.1.1 135493 2ax6A 256 45.89 a.123.1.1 127479 2ax9A 256 46.01 a.123.1.1 127481 1wc1A 226 49.65 d.58.29.1 114492 2ou3A 161 50.10 2gdrA 202 52.40 2qcxA 263 52.80 3cz8A 319 52.81 3bqsA 93 53.02 2hd1A 326 54.28 a.211.1.2 136338 3co4A 312 55.21 1tbbA 332 56.91 a.211.1.2 106741 1so2A 420 58.09 a.211.1.2 98936 1f0jA 377 59.43 a.211.1.2 19346 1edtA 271 60.67 c.1.8.5 28993 1u00A 227 61.68 a.8.4.1,b.130.1.1 112900,112901 1jndA 420 62.35 c.1.8.5,d.26.3.1 71757,71758 2opwA 291 63.27 1wpoA 256 64.41 b.57.1.1 27012 1u7eB 154 65.63 2hbtA 247 66.20 1d2kA 392 66.59 c.1.8.5,d.26.3.1 29008,38442 2i9fA 69 66.94 2fueA 262 66.97 c.108.1.10 134119 1u9lA 70 67.54 a.60.4.2 107751 1y2kA 349 68.89 a.211.1.2 122571 1jlvA 209 68.94 a.45.1.1,c.47.1.5 71729,71730 2p32A 120 70.36 1jlwA 219 71.46 a.45.1.1,c.47.1.5 71741,71742 1wc3A 219 72.17 d.58.29.1 114495 3b9eA 584 74.58 2fsaA 174 74.99 1hfoA 113 75.99 d.80.1.3 61006 2amyA 246 77.67 c.108.1.10 127026 2qneA 495 78.36 1lp1A 58 78.41 a.8.1.1 84664 1zgyA 272 79.88 a.123.1.1 125064 2zdhA 319 82.11 2pqqA 149 82.36 2inwA 133 82.39 d.110.8.1 137533 1deeG 54 84.37 a.8.1.1 16343 1v7oA 165 85.65 d.67.1.2 100480 2e7uA 424 85.93 1ll7A 392 86.06 c.1.8.5,d.26.3.1 78085,78086 1v4pA 157 86.45 d.67.1.2 113533 1bli 483 86.71 1l6xB 34 86.74 k.13.1.1 73644 2r8qA 359 86.83 2hpsA 186 87.65 2nteA 210 89.24