# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2gdrA 202 3.249 2e62A 61 3.652 1nq7A 244 5.354 a.123.1.1 92047 2q22A 139 5.984 1fcyA 236 8.583 a.123.1.1 19282 1zgyA 272 9.395 a.123.1.1 125064 2ebn 289 12.02 2gpuA 230 12.79 a.123.1.1 135493 2ntoA 201 14.38 2cz2A 223 15.77 1jlwA 219 16.62 a.45.1.1,c.47.1.5 71741,71742 1n83A 270 17.61 a.123.1.1 80276 1n2aA 201 18.89 a.45.1.1,c.47.1.5 91553,91554 1pq9A 253 20.08 a.123.1.1 95004 2ebnA 289 20.26 c.1.8.5 28990 3ct2A 382 20.39 1ctjA 89 20.80 a.3.1.1 15798 1v2aA 210 20.92 a.45.1.1,c.47.1.5 100263,100264 1goiA 499 21.37 b.72.2.1,c.1.8.5,d.26.3.1 65413,65414,65415 1t7rA 269 22.11 a.123.1.1 106635 1gwyA 175 22.92 b.97.1.1 83356 1nrlA 316 23.16 a.123.1.1 92091 2ax6A 256 24.79 a.123.1.1 127479 1e6pA 499 24.81 b.72.2.1,c.1.8.5,d.26.3.1 59314,59315,59316 1vf8A 377 25.16 c.1.8.5,d.26.3.1 120029,120030 1pzlA 237 27.87 a.123.1.1 104393 1iazA 179 28.83 b.97.1.1 62131 1ovlA 271 28.99 a.123.1.1 87455 1jdc 429 29.52 3cjhB 64 29.52 1jlvA 209 30.61 a.45.1.1,c.47.1.5 71729,71730 1dunA 134 31.08 b.85.4.1 28371 2ax9A 256 31.53 a.123.1.1 127481 1t07A 94 33.56 d.279.1.1 106196 1edtA 271 34.54 c.1.8.5 28993 1e9lA 377 34.87 c.1.8.5,d.26.3.1 59395,59396 2cpmA 94 35.25 1w9pA 433 36.10 c.1.8.5,d.26.3.1 114412,114413 1xpcA 248 37.84 a.123.1.1 115738 1ogoX 574 37.85 b.133.1.1,b.80.1.10 92925,92926 2g8lA 299 38.01 e.50.1.1 134775 2ax8A 256 38.61 1a0fA 201 38.69 a.45.1.1,c.47.1.5 17737,33031 1njgA 250 40.67 c.37.1.20 85785 1f2eA 201 41.73 a.45.1.1,c.47.1.5 17745,33039 1hg4A 279 44.55 a.123.1.1 19333 1n46A 258 45.33 a.123.1.1 85315 1z5rA 306 45.48 c.56.5.1 124488 1hkkA 364 47.25 c.1.8.5,d.26.3.1 90634,90635 1upvA 257 47.92 a.123.1.1 113398 2aaxA 275 48.95 1qkmA 255 50.13 a.123.1.1 19309 3c5tA 122 54.95 3ertA 261 56.35 a.123.1.1 19292 1gdvA 85 58.34 a.3.1.1 60458 1h32A 261 58.85 a.3.1.8,a.3.1.8 76618,76619 1wpoA 256 61.31 b.57.1.1 27012 1hjxA 362 62.15 c.1.8.5,d.26.3.1 83512,83513 1ctj 89 62.37 2aiuA 105 64.86 1d2kA 392 65.21 c.1.8.5,d.26.3.1 29008,38442 2hzlA 365 65.29 1qf6A 642 65.70 c.51.1.1,d.15.10.1,d.67.1.1,d.104.1.1 33210,39551,39562,40759 2pvqA 201 67.64 1c93A 265 71.05 c.1.8.5 28998 1ll7A 392 73.96 c.1.8.5,d.26.3.1 78085,78086 2e7uA 424 75.35 2hnlA 225 76.00 2jdxA 385 76.31 d.126.1.2 41139 2pqqA 149 78.74 2ou3A 161 82.60