# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2aaxA 275 0.5051 1ef1A 294 1.180 a.11.2.1,b.55.1.5,d.15.1.4 16368,27003,37611 1db1A 259 3.158 a.123.1.1 19329 2gpuA 230 3.334 a.123.1.1 135493 1jdc 429 3.455 2q22A 139 4.403 1z5rA 306 4.921 c.56.5.1 124488 1n2aA 201 5.037 a.45.1.1,c.47.1.5 91553,91554 1ssqA 267 6.067 b.81.1.6 105993 1nq7A 244 6.143 a.123.1.1 92047 1n46A 258 6.430 a.123.1.1 85315 2fphX 165 7.215 2qz7A 194 8.886 1v4pA 157 9.295 d.67.1.2 113533 1sr7A 259 9.387 a.123.1.1 105957 2dkhA 639 9.480 1satA 471 9.96 b.80.7.1,d.92.1.6 28014,40300 3brzA 439 10.04 1t7rA 269 10.31 a.123.1.1 106635 2r19A 159 11.55 2p8bA 369 11.59 2ax9A 256 12.00 a.123.1.1 127481 2ax6A 256 12.18 a.123.1.1 127479 2ef0A 301 12.37 2cz2A 223 12.53 2e62A 61 12.55 1v2aA 210 13.09 a.45.1.1,c.47.1.5 100263,100264 2ch5A 347 13.20 c.55.1.5,c.55.1.5 130453,130454 1s9pA 227 13.47 a.123.1.1 105384 1jdcA 429 14.16 b.71.1.1,c.1.8.1 27789,28776 2dkfA 431 14.28 1sh0A 510 14.91 e.8.1.4 98876 1pq9A 253 14.99 a.123.1.1 95004 1e7wA 291 15.58 c.2.1.2 59373 17gsA 210 15.60 a.45.1.1,c.47.1.5 17524,32818 1ox0A 430 16.72 c.95.1.1,c.95.1.1 87495,87496 1suwA 249 17.13 e.52.1.1 106027 1pgtA 210 17.25 a.45.1.1,c.47.1.5 17515,32809 1n83A 270 17.91 a.123.1.1 80276 2pvqA 201 18.45 2ax8A 256 19.87 1jlvA 209 20.84 a.45.1.1,c.47.1.5 71729,71730 1yloA 348 20.90 b.49.3.1,c.56.5.4 123659,123660 2p1zA 180 21.29 2pajA 492 22.19 3crrA 323 22.46 1ctjA 89 22.49 a.3.1.1 15798 1upvA 257 23.30 a.123.1.1 113398 1m4lA 307 23.48 c.56.5.1 78604 1uwwA 191 24.16 b.18.1.23 108079 1ugpA 203 26.44 d.149.1.1 107831 1sr8A 298 26.46 e.54.1.1 105959 3cu3A 172 26.93 2bhuA 602 27.35 b.1.18.2,b.71.1.1,c.1.8.1 128554,128555,128556 1ie9A 259 27.38 a.123.1.1 62318 1dd9A 338 27.94 e.13.1.1 43254 1t07A 94 28.96 d.279.1.1 106196 3dni 260 29.17 1xkyA 301 29.71 c.1.10.1 122094 1j0hA 588 29.86 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 1qo8A 566 30.37 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 1xpcA 248 30.73 a.123.1.1 115738 1xqwA 293 31.00 1edtA 271 31.06 c.1.8.5 28993 1c93A 265 31.57 c.1.8.5 28998 1r13A 148 32.64 d.169.1.1,h.1.1.1 96782,96783 1v7oA 165 33.06 d.67.1.2 100480 1qkmA 255 33.13 a.123.1.1 19309 1o7nB 194 33.22 d.17.4.4 81164 1c2pA 576 33.79 e.8.1.4 43117 1mucA 373 33.96 c.1.11.2,d.54.1.1 29236,38880 1y08A 323 34.37 d.3.1.12 116280 1ireA 204 34.46 d.149.1.1 76769 1fcyA 236 35.36 a.123.1.1 19282 1u1jA 765 35.36 c.1.22.2,c.1.22.2 107590,107591 2vl7A 540 36.33 2hhjA 267 36.76 c.60.1.1 136497 2ousA 331 37.05 1siqA 392 37.57 a.29.3.1,e.6.1.1 105585,105586 3ertA 261 38.25 a.123.1.1 19292 1fnoA 417 38.33 d.58.19.1,c.56.5.4 70145,75841 1eg9B 194 40.30 d.17.4.4 38120 2uz8A 174 40.46 1e6wA 260 40.52 c.2.1.2 59326 1o75A 415 41.27 b.1.20.1,b.1.20.1,b.120.1.1 81117,81118,81119 3cjhB 64 42.54 3cogA 403 42.60 1jalA 363 43.48 c.37.1.8,d.15.10.2 84138,84139 3c3dA 311 44.18 3cz8A 319 44.97 1zgyA 272 45.51 a.123.1.1 125064 1go3F 107 46.38 a.60.8.2 65407 1amy 403 46.42 1sqnA 261 47.08 a.123.1.1 105944 2ha9A 446 48.93 1o4sA 389 49.60 c.67.1.1 86620 1d3cA 686 50.42 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 1njgA 250 50.88 c.37.1.20 85785 1mtzA 293 51.54 c.69.1.7 79467 1gwyA 175 51.64 b.97.1.1 83356 1zeeA 403 51.85 a.266.1.2 124981 2atzA 180 52.25 d.264.1.3 127317 2o0mA 345 52.70 2fd5A 180 53.79 a.4.1.9,a.121.1.1 133291,133292 3cqyA 370 54.86 2ahdA 165 55.12 d.159.1.7 126752 2ctc 307 55.20 1lylA 504 55.23 b.40.4.1,d.104.1.1 25261,40717 2olnA 397 55.70 1ab4 477 56.72 3inkC 133 57.03 a.26.1.2 16881 2ip2A 334 57.69 1si6X 282 61.01 d.151.1.2 118968 1xiuA 230 61.09 2o5cA 659 61.98 3ct2A 382 62.93 3c5tA 122 64.44 1gcyA 527 66.92 b.71.1.1,c.1.8.1 27788,28775 2jfkA 433 68.97 1gdvA 85 70.09 a.3.1.1 60458 1mxgA 435 70.98 b.71.1.1,c.1.8.1 85193,85194 1k1xA 659 71.28 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1hg4A 279 71.53 a.123.1.1 19333 2bw0A 329 71.74 b.46.1.1,c.65.1.1 129303,129304 1kagA 173 72.09 c.37.1.2 72249 2cmtA 172 72.13 2e9qA 459 73.51 1kutA 230 73.52 d.143.1.1 73017 1iazA 179 73.70 b.97.1.1 62131 2q4aA 330 73.71 b.82.2.8 139839 2z3zA 706 74.08 2cpmA 94 75.61 1jlwA 219 76.15 a.45.1.1,c.47.1.5 71741,71742 1xnzA 264 76.62 d.127.1.1 115673 2avwA 311 76.72 1uh4A 637 77.84 b.1.18.2,b.71.1.1,c.1.8.1 99391,99392,99393 2f48A 555 78.26 c.89.1.1 132915 1oihA 301 78.45 b.82.2.5 93051 2hi2A 158 78.64 1sat 471 79.73 1lj2A 110 80.14 h.1.13.2 73926 2oblA 347 81.04 1po5A 476 82.67 a.104.1.1 94963 1chkA 238 83.12 d.2.1.7 36999 2vovA 336 84.86 1h2wA 710 86.37 b.69.7.1,c.69.1.4 76596,76597 1ctj 89 86.87 2aiuA 105 88.85 1el4A 195 89.37 a.39.1.5 59453