# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2e62A 61 3.785 2gdrA 202 4.546 2q22A 139 5.595 1nq7A 244 6.848 a.123.1.1 92047 1fcyA 236 9.658 a.123.1.1 19282 3ct2A 382 9.743 2ebn 289 11.29 1zgyA 272 12.93 a.123.1.1 125064 2gpuA 230 13.92 a.123.1.1 135493 1ctjA 89 15.66 a.3.1.1 15798 1n83A 270 16.54 a.123.1.1 80276 1t7rA 269 18.28 a.123.1.1 106635 1jdc 429 18.67 1nrlA 316 19.30 a.123.1.1 92091 1t07A 94 19.56 d.279.1.1 106196 2ax6A 256 19.61 a.123.1.1 127479 1jlwA 219 20.28 a.45.1.1,c.47.1.5 71741,71742 2ebnA 289 20.74 c.1.8.5 28990 2ntoA 201 22.27 2ax9A 256 23.34 a.123.1.1 127481 2cz2A 223 23.48 1pzlA 237 23.51 a.123.1.1 104393 1pq9A 253 23.78 a.123.1.1 95004 1e6pA 499 24.44 b.72.2.1,c.1.8.5,d.26.3.1 59314,59315,59316 1goiA 499 25.46 b.72.2.1,c.1.8.5,d.26.3.1 65413,65414,65415 2ax8A 256 28.36 1n2aA 201 29.30 a.45.1.1,c.47.1.5 91553,91554 3cjhB 64 30.00 1njgA 250 30.49 c.37.1.20 85785 1ovlA 271 32.72 a.123.1.1 87455 1edtA 271 32.83 c.1.8.5 28993 1vf8A 377 33.06 c.1.8.5,d.26.3.1 120029,120030 1v2aA 210 33.35 a.45.1.1,c.47.1.5 100263,100264 2aaxA 275 33.76 2g8lA 299 35.18 e.50.1.1 134775 1xpcA 248 36.06 a.123.1.1 115738 1ogoX 574 37.47 b.133.1.1,b.80.1.10 92925,92926 1jlvA 209 38.00 a.45.1.1,c.47.1.5 71729,71730 1w9pA 433 40.34 c.1.8.5,d.26.3.1 114412,114413 3ertA 261 42.99 a.123.1.1 19292 1qkmA 255 45.26 a.123.1.1 19309 3c5tA 122 45.82 1gwyA 175 45.99 b.97.1.1 83356 1e9lA 377 46.00 c.1.8.5,d.26.3.1 59395,59396 1z5rA 306 46.16 c.56.5.1 124488 1hg4A 279 46.48 a.123.1.1 19333 2hzlA 365 46.98 2cpmA 94 47.90 1ctj 89 48.90 1iazA 179 49.17 b.97.1.1 62131 1gdvA 85 50.07 a.3.1.1 60458 1dunA 134 52.57 b.85.4.1 28371 1upvA 257 52.89 a.123.1.1 113398 1n46A 258 53.66 a.123.1.1 85315 1a0fA 201 53.85 a.45.1.1,c.47.1.5 17737,33031 1hkkA 364 54.54 c.1.8.5,d.26.3.1 90634,90635 2aiuA 105 55.68 1h32A 261 56.67 a.3.1.8,a.3.1.8 76618,76619 1wpoA 256 59.46 b.57.1.1 27012 1pk5A 248 59.52 a.123.1.1 88139 1c93A 265 71.14 c.1.8.5 28998 1hjxA 362 71.38 c.1.8.5,d.26.3.1 83512,83513 1f2eA 201 72.38 a.45.1.1,c.47.1.5 17745,33039 3b64A 112 74.55 2nqtA 352 79.78 1d2kA 392 79.87 c.1.8.5,d.26.3.1 29008,38442 2dg7A 195 81.80 1bli 483 82.19 2ou3A 161 87.02 2pmiB 293 87.06 2fsaA 174 88.52