# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1nq7A 244 2.481 a.123.1.1 92047 2gdrA 202 3.577 2q22A 139 3.616 1zgyA 272 3.841 a.123.1.1 125064 2e62A 61 5.196 1fcyA 236 5.565 a.123.1.1 19282 2gpuA 230 7.291 a.123.1.1 135493 3cjhB 64 7.428 2ebn 289 7.917 1nrlA 316 11.07 a.123.1.1 92091 1pq9A 253 12.50 a.123.1.1 95004 1kagA 173 12.69 c.37.1.2 72249 2ntoA 201 12.86 1ovlA 271 13.60 a.123.1.1 87455 1n83A 270 16.23 a.123.1.1 80276 1pzlA 237 16.36 a.123.1.1 104393 2cz2A 223 16.65 1upvA 257 16.77 a.123.1.1 113398 1t07A 94 17.42 d.279.1.1 106196 2ebnA 289 17.72 c.1.8.5 28990 1qkmA 255 19.71 a.123.1.1 19309 1ctjA 89 20.16 a.3.1.1 15798 1xpcA 248 21.81 a.123.1.1 115738 1t7rA 269 22.37 a.123.1.1 106635 1n46A 258 25.03 a.123.1.1 85315 2e7uA 424 25.88 2g8lA 299 30.12 e.50.1.1 134775 1gwyA 175 30.42 b.97.1.1 83356 2pt5A 168 30.67 1jlvA 209 30.76 a.45.1.1,c.47.1.5 71729,71730 2ax6A 256 32.02 a.123.1.1 127479 1e6pA 499 33.21 b.72.2.1,c.1.8.5,d.26.3.1 59314,59315,59316 1vf8A 377 36.14 c.1.8.5,d.26.3.1 120029,120030 3ct2A 382 36.53 1goiA 499 36.73 b.72.2.1,c.1.8.5,d.26.3.1 65413,65414,65415 1owqA 361 37.84 c.1.8.5,d.26.3.1 104041,104042 3b9eA 584 38.50 1iazA 179 38.60 b.97.1.1 62131 1e9lA 377 44.46 c.1.8.5,d.26.3.1 59395,59396 1njgA 250 44.54 c.37.1.20 85785 3c5tA 122 44.56 1jdc 429 44.70 1jalA 363 45.42 c.37.1.8,d.15.10.2 84138,84139 2aaxA 275 45.53 1n2aA 201 45.88 a.45.1.1,c.47.1.5 91553,91554 1vqoD 177 46.44 d.77.1.1 120365 2ax8A 256 47.92 2hzlA 365 49.30 1pk5A 248 49.96 a.123.1.1 88139 1gdvA 85 53.99 a.3.1.1 60458 1jlwA 219 55.12 a.45.1.1,c.47.1.5 71741,71742 3ertA 261 55.86 a.123.1.1 19292 1dunA 134 56.70 b.85.4.1 28371 1ymtA 246 58.41 1edtA 271 58.60 c.1.8.5 28993 2aiuA 105 60.03 1z5rA 306 60.42 c.56.5.1 124488 2cpmA 94 61.72 1go3F 107 62.77 a.60.8.2 65407 1ew0A 130 63.25 d.110.3.2 40905 3bsoA 510 66.01 1h32A 261 66.42 a.3.1.8,a.3.1.8 76618,76619 1w9pA 433 67.65 c.1.8.5,d.26.3.1 114412,114413 1wpoA 256 68.86 b.57.1.1 27012 1hkkA 364 69.56 c.1.8.5,d.26.3.1 90634,90635 1eg7A 557 69.98 c.37.1.10 32241 1ogoX 574 71.81 b.133.1.1,b.80.1.10 92925,92926 1a0fA 201 73.26 a.45.1.1,c.47.1.5 17737,33031 1ctj 89 76.98 1d3cA 686 79.36 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 2nqtA 352 80.90 1u7eB 154 81.62 2hktA 172 84.13 2ax9A 256 85.01 a.123.1.1 127481 2pvqA 201 85.94 2jd3A 130 86.22 1rl4A 188 87.88 d.167.1.1 97636 1v2aA 210 88.59 a.45.1.1,c.47.1.5 100263,100264