# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ax8A	256	7.753		
2gpuA	230	8.158	a.123.1.1	135493
2q22A	139	8.297		
2ax9A	256	10.07	a.123.1.1	127481
1t7rA	269	10.93	a.123.1.1	106635
2ax6A	256	11.13	a.123.1.1	127479
1iazA	179	15.08	b.97.1.1	62131
1gwyA	175	15.08	b.97.1.1	83356
1ogoX	574	19.55	b.133.1.1,b.80.1.10	92925,92926
1qkmA	255	21.38	a.123.1.1	19309
2aaxA	275	21.68		
1vqoD	177	22.67	d.77.1.1	120365
2g8lA	299	25.77	e.50.1.1	134775
1ne6A	283	26.80	b.82.3.2,b.82.3.2	91831,91832
1zgyA	272	27.98	a.123.1.1	125064
1ireA	204	33.52	d.149.1.1	76769
2ahjA	206	35.56	d.149.1.1	41772
2qdyA	207	37.38		
2jdxA	385	39.72	d.126.1.2	41139
3ct2A	382	41.13		
1ugpA	203	41.58	d.149.1.1	107831
2uubP	88	42.41	d.27.1.1	139947
2gdrA	202	47.27		
1h32A	261	48.28	a.3.1.8,a.3.1.8	76618,76619
1xpcA	248	51.65	a.123.1.1	115738
3cu3A	172	51.79		
1tz9A	367	56.78	c.1.15.6	107466
2p35A	259	60.52		
2hd5A	359	60.92		
1sr7A	259	66.05	a.123.1.1	105957
3ertA	261	67.20	a.123.1.1	19292
1jlwA	219	67.32	a.45.1.1,c.47.1.5	71741,71742
2o37A	92	69.18		
3cjhB	64	69.71		
1d3cA	686	72.97	b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1	21827,22496,27734,28721
2zihA	347	73.33		
1ovlA	271	75.63	a.123.1.1	87455
1qwlA	505	76.87	e.5.1.1	96483
1r1hA	696	80.40	d.92.1.4	104756
1nrlA	316	81.70	a.123.1.1	92091
2vqeP	88	85.64		
3b64A	112	86.26		
2gdgA	114	87.75	d.80.1.3	135015
1oxxK	353	89.87	b.40.6.3,c.37.1.12	93715,93716