# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2q22A	139	3.969		
1ugpA	203	13.86	d.149.1.1	107831
1ireA	204	17.01	d.149.1.1	76769
1dunA	134	18.88	b.85.4.1	28371
2g8lA	299	25.89	e.50.1.1	134775
1iazA	179	33.82	b.97.1.1	62131
1jlwA	219	34.95	a.45.1.1,c.47.1.5	71741,71742
2ahjA	206	36.03	d.149.1.1	41772
1gwyA	175	37.51	b.97.1.1	83356
2gpuA	230	39.32	a.123.1.1	135493
1ogoX	574	42.03	b.133.1.1,b.80.1.10	92925,92926
1owqA	361	44.48	c.1.8.5,d.26.3.1	104041,104042
2gdrA	202	44.94		
1h32A	261	45.11	a.3.1.8,a.3.1.8	76618,76619
2e7uA	424	47.96		
3ct2A	382	49.47		
2qdyA	207	49.51		
1jlvA	209	56.15	a.45.1.1,c.47.1.5	71729,71730
1dc1A	323	56.83	c.52.1.11	33321
2ntoA	201	62.61		
2hbtA	247	67.07		
1ctjA	89	67.69	a.3.1.1	15798
2ol1A	147	70.24		
1goiA	499	70.41	b.72.2.1,c.1.8.5,d.26.3.1	65413,65414,65415
1wj7A	104	73.93	a.5.2.1	120976
1jdc	429	75.38		
2inwA	133	75.39	d.110.8.1	137533
1hkkA	364	77.23	c.1.8.5,d.26.3.1	90634,90635
3cjhB	64	77.82		
1e9lA	377	79.64	c.1.8.5,d.26.3.1	59395,59396
1vf8A	377	80.34	c.1.8.5,d.26.3.1	120029,120030
2uubP	88	81.50	d.27.1.1	139947
1mpuA	138	88.63	d.169.1.1	85040