Best Alignments for T0487

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1u04A	6.9380e-41	1u04A/T0487-1u04A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.14.1 c.55.3.10
1w9hA	8.3942e-28	1w9hA/T0487-1w9hA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.55.3.10
1r4kA	4.4747e-08	1r4kA/T0487-1r4kA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.14.1
1si2A	2.2860e-07	1si2A/T0487-1si2A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.14.1
1xocA	1.0980e+01	1xocA/T0487-1xocA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1jetA	1.3721e+01	1jetA/T0487-1jetA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1vr5A	1.3856e+01	1vr5A/T0487-1vr5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.94.1.1
1zlqA	1.4907e+01	1zlqA/T0487-1zlqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.94.1.1
1uqwA	1.5709e+01	1uqwA/T0487-1uqwA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.94.1.1
1uiuA	1.5972e+01	1uiuA/T0487-1uiuA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1h70A	1.6531e+01	1h70A/T0487-1h70A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.126.1.3
2grvA	1.6745e+01	2grvA/T0487-2grvA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2puzA	1.9652e+01	2puzA/T0487-2puzA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2dri	2.0847e+01	2dri/T0487-2dri-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1zu0A	2.1104e+01	1zu0A/T0487-1zu0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2d5wA	2.3849e+01	2d5wA/T0487-2d5wA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2nooA	2.4303e+01	2nooA/T0487-2nooA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2i9uA	2.5698e+01	2i9uA/T0487-2i9uA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1dppA	2.8019e+01	1dppA/T0487-1dppA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.94.1.1
3cnyA	2.8629e+01	3cnyA/T0487-3cnyA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001