# List of top-scoring protein chains for T0487.t2k-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yvuA	706	5.04e-41	b.34.14.1,c.55.3.10	124120,124121
1u04A	771	3.92e-40	b.34.14.1,c.55.3.10	107539,107540
1w9hA	427	2.40e-11	c.55.3.10	120785
1si2A	149	3.77e-05	b.34.14.1	105569
1r4kA	169	0.000170	b.34.14.1	96997
1vynA	143	0.2364	b.34.14.1	108904
1t2rA	123	0.2909	b.34.14.1	106286
1g7sA	594	0.8896	b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8	25712,25713,31032,32147
1r6zA	509	1.822	b.34.14.1,c.94.1.1	97169,97170
2cjaA	522	2.845		
2qvwA	756	6.409		
1wleA	501	11.64		
3bs0A	439	16.92		
2hpgA	327	21.92		
1iy2A	278	27.07	c.37.1.20	76941
1ixzA	254	27.16	c.37.1.20	76938
1ej0A	180	29.13	c.66.1.2	34179
1gojA	355	33.76	c.37.1.9	65419
2dhrA	499	39.80		
2b0jA	358	40.28	a.100.1.11,c.2.1.6	127639,127640
2c9jA	223	41.35		
3crvA	551	45.61		
1bjnA	360	50.54	c.67.1.4	34469
2ajuH	219	51.06		
1c0aA	585	51.19	b.40.4.1,d.74.4.1,d.104.1.1	25246,39731,40767
1il2A	590	51.54	b.40.4.1,d.74.4.1,d.104.1.1	66193,66194,66195
1lv7A	257	52.65	c.37.1.20	78232
1qksA	567	60.85	a.3.1.2,b.70.2.1	15951,27710
2jiwA	716	60.99		
2j47A	716	61.07	a.246.1.1,c.1.8.10,d.92.2.3	137991,137992,137993
2choA	716	61.29	a.246.1.1,c.1.8.10,d.92.2.3	130479,130480,130481
1ad5A	438	61.54	b.34.2.1,d.93.1.1,d.144.1.7	24505,40491,41681
2j4gA	715	61.55		
3bkwA	243	62.12		
1gnlA	544	69.64	e.26.1.1	70287
1e2rA	567	70.71	a.3.1.2,b.70.2.1	15953,27712
1hj5A	567	72.40	a.3.1.2,b.70.2.1	15927,27684
1gq1A	567	72.63	a.3.1.2,b.70.2.1	76264,76265
2g5gX	268	76.59		
2j78A	468	79.89	c.1.8.4	138099
2rjmA	284	83.20		
2eq6A	464	85.38