# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	5.78e-40	b.34.14.1,c.55.3.10	107539,107540
1w9hA	427	3.25e-26	c.55.3.10	120785
1r4kA	169	1.27e-07	b.34.14.1	96997
1si2A	149	2.86e-06	b.34.14.1	105569
1h70A	255	6.995	d.126.1.3	60711
2dxnA	274	7.800		
1ma3A	253	10.09	c.31.1.5	78883
1el5A	389	10.75	c.3.1.2,d.16.1.3	30369,37937
1pb7A	292	22.03	c.94.1.1	88025
3c6qA	311	25.26		
1g0uC	243	26.33	d.153.1.4	41948
1dn1A	594	26.39	e.25.1.1	43357
2z08A	137	26.73		
1m6iA	493	27.04	c.3.1.5,c.3.1.5,d.87.1.1	74533,74534,74535
2qm1A	326	29.21		
1w0hA	204	30.58	c.55.3.5	114064
1epuA	591	31.69	e.25.1.1	43358
1vb5A	276	32.31	c.124.1.5	113604
1yc5A	246	33.68	c.31.1.5	122910
3ladA	476	34.20	c.3.1.5,c.3.1.5,d.87.1.1	30573,30574,40208
1nnt	328	34.41		
2pfsA	150	34.65		
1zp4A	304	39.28		
1wkbA	810	42.96		
2f02A	323	43.60	c.72.1.1	132649
1xfoA	357	47.72	b.49.3.1,c.56.5.4	115265,115266
1oaoA	674	48.11	e.26.1.2	86744
1v8fA	276	50.71	c.26.1.4	100503
2qvcA	313	53.38		
1u3dA	509	55.02	a.99.1.1,c.28.1.1	107638,107639
1lst	239	56.96		
1es9A	232	57.86	c.23.10.3	31340
2h3hA	313	59.12		
1lstA	239	63.65	c.94.1.1	35755
1i8dA	213	67.84	b.43.4.3,b.43.4.3	61953,61954
1qopB	396	68.30	c.79.1.1	35270
1jqfA	334	71.02	c.94.1.2	67086
1pmd	675	71.10		
1ihoA	283	72.95	c.26.1.4	62390
3d02A	303	73.12		
1hslA	238	73.92	c.94.1.1	35804
1gv4A	528	75.27	c.3.1.5,c.3.1.5,d.87.1.1	70589,70590,70591
1vpwA	340	75.44	a.35.1.5,c.93.1.1	17087,35680
2dri	271	75.59		
2liv	344	78.62		
2cduA	452	79.18		
1gggA	226	81.00	c.94.1.1	35817
1qv9A	283	81.78	c.127.1.1	96356
1z6rA	406	82.84	a.4.5.63,c.55.1.10,c.55.1.10	124557,124558,124559
2g3kA	94	83.80	a.24.28.1	134562
1usgA	346	85.51	c.93.1.1	99864