# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	1.83e-42	b.34.14.1,c.55.3.10	107539,107540
1w9hA	427	1.39e-27	c.55.3.10	120785
1r4kA	169	8.07e-08	b.34.14.1	96997
1si2A	149	1.24e-06	b.34.14.1	105569
1h70A	255	6.234	d.126.1.3	60711
2dxnA	274	9.96		
1g0uC	243	10.03	d.153.1.4	41948
1xfoA	357	13.24	b.49.3.1,c.56.5.4	115265,115266
2qm1A	326	21.38		
1ma3A	253	22.44	c.31.1.5	78883
1nnt	328	25.16		
1es9A	232	26.41	c.23.10.3	31340
1pb7A	292	26.45	c.94.1.1	88025
1el5A	389	26.52	c.3.1.2,d.16.1.3	30369,37937
2z08A	137	29.19		
1vpwA	340	30.06	a.35.1.5,c.93.1.1	17087,35680
1vb5A	276	32.34	c.124.1.5	113604
1w0hA	204	32.57	c.55.3.5	114064
1zp4A	304	32.63		
1dn1A	594	34.25	e.25.1.1	43357
1j8fA	323	38.13	c.31.1.5	62738
2pfsA	150	42.15		
1epuA	591	42.44	e.25.1.1	43358
2qvcA	313	43.08		
2dri	271	47.44		
1wkbA	810	51.55		
1yc5A	246	53.35	c.31.1.5	122910
3c6qA	311	55.31		
2bi7A	384	55.38		
1ftrA	296	60.55	d.58.33.1,d.58.33.1	39485,39486
1qopB	396	61.69	c.79.1.1	35270
1lst	239	63.56		
3ladA	476	64.07	c.3.1.5,c.3.1.5,d.87.1.1	30573,30574,40208
1u3dA	509	64.58	a.99.1.1,c.28.1.1	107638,107639
1xdpA	687	65.40	a.7.15.1,d.322.1.2,d.136.1.4,d.136.1.4	121896,121897,121898,121899
2i5gA	325	66.03		
1lstA	239	69.01	c.94.1.1	35755
1z6rA	406	69.95	a.4.5.63,c.55.1.10,c.55.1.10	124557,124558,124559
1v8fA	276	73.17	c.26.1.4	100503
1m6iA	493	76.18	c.3.1.5,c.3.1.5,d.87.1.1	74533,74534,74535
2f5tX	233	76.42		
2a8yA	270	78.01		
3d02A	303	78.35		
1gtdA	85	85.83	d.284.1.1	76344
2yx0A	342	86.28		
1ng6A	148	88.07	a.182.1.1	85670
1clqA	903	88.41	c.55.3.5,e.8.1.1	33717,43006
2cduA	452	88.48		
2ph0A	174	88.70