# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	1.68e-20	b.34.14.1,c.55.3.10	107539,107540
1w9hA	427	7.04e-14	c.55.3.10	120785
1r4kA	169	0.000220	b.34.14.1	96997
1si2A	149	0.000696	b.34.14.1	105569
1g0uC	243	16.66	d.153.1.4	41948
1h70A	255	17.13	d.126.1.3	60711
1oaoA	674	23.27	e.26.1.2	86744
2dxnA	274	24.74		
3be4A	217	25.87		
1pb7A	292	26.96	c.94.1.1	88025
1dn1A	594	27.95	e.25.1.1	43357
3c6qA	311	33.36		
1w0hA	204	34.38	c.55.3.5	114064
1d0cA	444	40.41	d.174.1.1	64769
1u3dA	509	40.49	a.99.1.1,c.28.1.1	107638,107639
2liv	344	45.19		
2a8yA	270	45.40		
2z08A	137	45.79		
1el5A	389	49.07	c.3.1.2,d.16.1.3	30369,37937
1nnt	328	50.68		
2e79A	108	51.63		
1lstA	239	51.70	c.94.1.1	35755
1lst	239	53.59		
2b4uA	335	58.05		
1xfoA	357	61.37	b.49.3.1,c.56.5.4	115265,115266
1usgA	346	62.62	c.93.1.1	99864
1qopB	396	65.38	c.79.1.1	35270
2f5tX	233	65.74		
1vb5A	276	67.59	c.124.1.5	113604
1hslA	238	68.33	c.94.1.1	35804
1rypC	244	68.45	d.153.1.4	41934
1wdnA	226	71.93	c.94.1.1	35816
1zp4A	304	73.02		
1wkbA	810	73.66		
2dri	271	74.05		
1m7xA	617	74.80	b.1.18.2,b.71.1.1,c.1.8.1	78749,78750,78751
3ladA	476	75.08	c.3.1.5,c.3.1.5,d.87.1.1	30573,30574,40208
1e5dA	402	76.06	c.23.5.1,d.157.1.3	31208,42061
1ywnA	316	77.03	d.144.1.7	124161
2pfsA	150	77.79		
1jqfA	334	77.99	c.94.1.2	67086
2gy9C	206	78.54		
1zxxA	319	79.21		
1vkiA	181	79.97	d.116.1.1	108664
1vpwA	340	80.60	a.35.1.5,c.93.1.1	17087,35680
3d02A	303	81.25		
1rzmA	338	81.96	c.1.10.4	105137
2qvcA	313	84.21		
1m6iA	493	85.34	c.3.1.5,c.3.1.5,d.87.1.1	74533,74534,74535
2pfkA	320	85.42	c.89.1.1	35577
2yx0A	342	88.74