# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	9.57e-40	b.34.14.1,c.55.3.10	107539,107540
1w9hA	427	1.68e-25	c.55.3.10	120785
1r4kA	169	1.42e-07	b.34.14.1	96997
1si2A	149	6.92e-06	b.34.14.1	105569
1el5A	389	4.255	c.3.1.2,d.16.1.3	30369,37937
1h70A	255	6.912	d.126.1.3	60711
2dxnA	274	13.20		
1xfoA	357	13.65	b.49.3.1,c.56.5.4	115265,115266
2dorA	311	18.98	c.1.4.1	28593
3ladA	476	22.53	c.3.1.5,c.3.1.5,d.87.1.1	30573,30574,40208
1wkbA	810	24.06		
1zp4A	304	28.80		
1oaoA	674	29.14	e.26.1.2	86744
1nnt	328	29.23		
1pb7A	292	29.66	c.94.1.1	88025
1qv9A	283	29.80	c.127.1.1	96356
1ma3A	253	36.10	c.31.1.5	78883
1jubA	311	38.23	c.1.4.1	90908
1qopB	396	38.42	c.79.1.1	35270
2q8zA	342	40.46		
1lst	239	41.28		
1lstA	239	41.31	c.94.1.1	35755
1w0hA	204	43.63	c.55.3.5	114064
1xvqA	175	43.68	c.47.1.10	116094
2g3kA	94	45.68	a.24.28.1	134562
1pnsB	234	46.60	i.1.1.1	88169
1ih7A	903	47.60	c.55.3.5,e.8.1.1	62375,62376
1jqfA	334	48.07	c.94.1.2	67086
2qm1A	326	49.67		
2liv	344	54.85		
1vb5A	276	55.04	c.124.1.5	113604
1dorA	311	57.03	c.1.4.1	28595
1vpwA	340	57.21	a.35.1.5,c.93.1.1	17087,35680
3c6qA	311	58.20		
1r30A	369	63.93	c.1.28.1	96895
1e5dA	402	70.35	c.23.5.1,d.157.1.3	31208,42061
2z08A	137	74.39		
1dn1A	594	78.05	e.25.1.1	43357
1hslA	238	80.52	c.94.1.1	35804
1y0yA	353	83.45	b.49.3.1,c.56.5.4	122514,122515
1q1lA	401	84.64	d.258.1.1	95591
1ftrA	296	85.02	d.58.33.1,d.58.33.1	39485,39486
1es9A	232	85.47	c.23.10.3	31340
1m6iA	493	85.59	c.3.1.5,c.3.1.5,d.87.1.1	74533,74534,74535