# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	9.81e-41	b.34.14.1,c.55.3.10	107539,107540
1w9hA	427	3.88e-26	c.55.3.10	120785
1r4kA	169	1.11e-07	b.34.14.1	96997
1si2A	149	6.23e-06	b.34.14.1	105569
1el5A	389	4.221	c.3.1.2,d.16.1.3	30369,37937
1h70A	255	6.151	d.126.1.3	60711
2dxnA	274	7.369		
1pb7A	292	26.34	c.94.1.1	88025
3ladA	476	27.04	c.3.1.5,c.3.1.5,d.87.1.1	30573,30574,40208
2dorA	311	27.88	c.1.4.1	28593
1wkbA	810	28.69		
1w0hA	204	28.74	c.55.3.5	114064
1ma3A	253	28.92	c.31.1.5	78883
1nnt	328	29.30		
1qv9A	283	30.56	c.127.1.1	96356
1xfoA	357	32.92	b.49.3.1,c.56.5.4	115265,115266
1zp4A	304	33.60		
1oaoA	674	33.74	e.26.1.2	86744
1jqfA	334	34.26	c.94.1.2	67086
1qopB	396	38.54	c.79.1.1	35270
1lst	239	38.92		
1lstA	239	39.33	c.94.1.1	35755
1vb5A	276	41.32	c.124.1.5	113604
2g3kA	94	46.15	a.24.28.1	134562
2q8zA	342	46.48		
1pnsB	234	46.52	i.1.1.1	88169
1vpwA	340	48.37	a.35.1.5,c.93.1.1	17087,35680
1xvqA	175	49.10	c.47.1.10	116094
1es9A	232	49.71	c.23.10.3	31340
1r30A	369	51.67	c.1.28.1	96895
2qm1A	326	54.60		
2z08A	137	55.94		
1jubA	311	57.41	c.1.4.1	90908
3c6qA	311	59.81		
1m6iA	493	63.60	c.3.1.5,c.3.1.5,d.87.1.1	74533,74534,74535
1wzlA	585	63.68	b.1.18.2,b.71.1.1,c.1.8.1	121513,121514,121515
1hslA	238	64.28	c.94.1.1	35804
1dn1A	594	64.32	e.25.1.1	43357
1zi8A	236	72.74		
2j9uA	96	75.62	a.24.28.1	138155
1a0fA	201	78.09	a.45.1.1,c.47.1.5	17737,33031
1gr2A	279	83.67	c.94.1.1	35825
1yc5A	246	84.60	c.31.1.5	122910
1h7xA	1025	85.13	a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5	15687,28632,30328,30613,39011
1gtdA	85	86.74	d.284.1.1	76344
1y0yA	353	86.86	b.49.3.1,c.56.5.4	122514,122515