# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	7.92e-42	b.34.14.1,c.55.3.10	107539,107540
1w9hA	427	8.96e-27	c.55.3.10	120785
1r4kA	169	6.97e-08	b.34.14.1	96997
1si2A	149	2.44e-06	b.34.14.1	105569
1el5A	389	6.747	c.3.1.2,d.16.1.3	30369,37937
2dxnA	274	7.497		
1h70A	255	7.543	d.126.1.3	60711
1qv9A	283	12.19	c.127.1.1	96356
2dorA	311	21.40	c.1.4.1	28593
3ladA	476	22.15	c.3.1.5,c.3.1.5,d.87.1.1	30573,30574,40208
1nnt	328	26.27		
1xfoA	357	26.86	b.49.3.1,c.56.5.4	115265,115266
1pb7A	292	27.27	c.94.1.1	88025
1oaoA	674	29.30	e.26.1.2	86744
1ma3A	253	31.04	c.31.1.5	78883
1wkbA	810	34.41		
1ih7A	903	35.62	c.55.3.5,e.8.1.1	62375,62376
1qopB	396	36.72	c.79.1.1	35270
1lstA	239	37.61	c.94.1.1	35755
2q8zA	342	37.64		
3c6qA	311	38.19		
1lst	239	38.60		
1xvqA	175	38.82	c.47.1.10	116094
1jubA	311	42.06	c.1.4.1	90908
2g3kA	94	43.72	a.24.28.1	134562
1es9A	232	45.28	c.23.10.3	31340
1w0hA	204	46.65	c.55.3.5	114064
1vpwA	340	46.82	a.35.1.5,c.93.1.1	17087,35680
1zp4A	304	49.25		
2qm1A	326	50.45		
1jqfA	334	52.21	c.94.1.2	67086
1pmd	675	52.62		
1dn1A	594	53.76	e.25.1.1	43357
1pnsB	234	55.55	i.1.1.1	88169
2z08A	137	60.73		
1hslA	238	63.43	c.94.1.1	35804
1wzlA	585	65.00	b.1.18.2,b.71.1.1,c.1.8.1	121513,121514,121515
1m6iA	493	65.84	c.3.1.5,c.3.1.5,d.87.1.1	74533,74534,74535
1vb5A	276	69.00	c.124.1.5	113604
1r30A	369	70.69	c.1.28.1	96895
2bi7A	384	70.96		
1y7pA	223	77.08	c.23.1.7,d.58.18.12	122708,122709
3bqkA	360	78.79		
1y0yA	353	81.04	b.49.3.1,c.56.5.4	122514,122515
1i8dA	213	89.37	b.43.4.3,b.43.4.3	61953,61954
1a0fA	201	89.40	a.45.1.1,c.47.1.5	17737,33031