# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u04A 771 1.16e-47 b.34.14.1,c.55.3.10 107539,107540 1w9hA 427 2.22e-31 c.55.3.10 120785 1r4kA 169 2.43e-08 b.34.14.1 96997 1si2A 149 1.47e-06 b.34.14.1 105569 1h70A 255 2.828 d.126.1.3 60711 2qm1A 326 5.053 1glcG 501 8.473 c.55.1.4,c.55.1.4 33519,33520 1rthA 560 9.042 c.55.3.1,e.8.1.2 33576,43028 1nnt 328 9.909 1qv9A 283 15.84 c.127.1.1 96356 1qumA 285 16.52 c.1.15.1 29393 2z08A 137 17.18 1d2eA 397 19.06 b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 1e4fT 419 21.40 c.55.1.1,c.55.1.1 33453,33454 1qtwA 285 21.54 c.1.15.1 29392 2al1A 436 21.56 c.1.11.1,d.54.1.1 126949,126950 2rgyA 290 25.98 1gudA 288 28.88 c.93.1.1 83326 1z6rA 406 35.31 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 1g0uE 234 35.99 d.153.1.4 41950 3cs3A 277 36.45 2pfsA 150 38.42 1efcA 393 41.03 b.43.3.1,b.44.1.1,c.37.1.8 25680,25720,32113 1u8sA 192 42.96 d.58.18.5,d.58.18.5 107737,107738 1vh0A 161 44.64 c.116.1.3 100626 1vpwA 340 45.68 a.35.1.5,c.93.1.1 17087,35680 5nul 138 48.79 1vrtA 560 48.91 c.55.3.1,e.8.1.2 33574,43023 2p3rA 510 48.97 c.55.1.4,c.55.1.4 139471,139472 1zpvA 91 49.71 d.58.18.7 125475 2qcuA 501 50.75 1jftA 340 51.73 a.35.1.5,c.93.1.1 66652,66653 1ta9A 450 52.44 1pmd 675 52.65 1gca 309 56.13 1g61A 228 56.44 d.126.1.1 41126 1vkiA 181 59.91 d.116.1.1 108664 2qswA 100 60.71 1bu6O 501 61.53 c.55.1.4,c.55.1.4 33499,33500 1usgA 346 65.26 c.93.1.1 99864 2b4yA 271 69.71 c.31.1.5 127868 1q1lA 401 70.25 d.258.1.1 95591 1ma3A 253 71.42 c.31.1.5 78883 1lbkA 208 71.90 a.45.1.1,c.47.1.5 73809,73810 2sas 185 71.98 2h6rA 219 73.83 1qpzA 340 74.66 a.35.1.5,c.93.1.1 17097,35673 2zfdB 123 75.38 2ou3A 161 77.50 1el5A 389 78.13 c.3.1.2,d.16.1.3 30369,37937 3bk6A 188 79.86 1tk1A 260 80.51 d.248.1.1 107066 2nqlA 388 81.11 1r59O 505 81.27 c.55.1.4,c.55.1.4 111697,111698 1dk0A 188 81.53 d.35.1.1 38530 2jx5A 69 82.05 2p5vA 162 84.01 1rypG 244 86.94 d.153.1.4 41938 1nijA 318 87.49 c.37.1.10,d.237.1.1 85741,85742 1yqhA 109 89.79 d.58.48.1 123886