# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	3.42e-32	b.34.14.1,c.55.3.10	107539,107540
1w9hA	427	2.76e-21	c.55.3.10	120785
1r4kA	169	1.38e-06	b.34.14.1	96997
1si2A	149	2.32e-05	b.34.14.1	105569
1h70A	255	7.221	d.126.1.3	60711
1el5A	389	14.04	c.3.1.2,d.16.1.3	30369,37937
3c6qA	311	14.07		
1zp4A	304	19.12		
1nnt	328	21.06		
1g0uC	243	21.16	d.153.1.4	41948
2dxnA	274	29.83		
2qm1A	326	37.76		
1w0hA	204	37.98	c.55.3.5	114064
1pb7A	292	38.72	c.94.1.1	88025
1jqfA	334	39.80	c.94.1.2	67086
1xfoA	357	42.55	b.49.3.1,c.56.5.4	115265,115266
1oaoA	674	45.09	e.26.1.2	86744
1q1lA	401	47.82	d.258.1.1	95591
2f5tX	233	49.00		
1e5dA	402	49.44	c.23.5.1,d.157.1.3	31208,42061
2qvcA	313	53.09		
3ladA	476	53.61	c.3.1.5,c.3.1.5,d.87.1.1	30573,30574,40208
1ma3A	253	55.50	c.31.1.5	78883
1qopB	396	58.68	c.79.1.1	35270
2pfsA	150	63.46		
1es9A	232	64.24	c.23.10.3	31340
2q8zA	342	65.00		
1z6rA	406	65.07	a.4.5.63,c.55.1.10,c.55.1.10	124557,124558,124559
1r30A	369	65.78	c.1.28.1	96895
1b9zA	516	69.81	b.3.1.1,c.1.8.1	22528,28798
1xvqA	175	69.95	c.47.1.10	116094
1wkbA	810	71.23		
1lstA	239	74.73	c.94.1.1	35755
3c8cA	240	76.32		
1lst	239	83.25		
1twdA	256	83.57	c.1.30.1	107397
1pnsB	234	84.11	i.1.1.1	88169
1epuA	591	84.19	e.25.1.1	43358
2h3hA	313	84.27		
1jlvA	209	86.36	a.45.1.1,c.47.1.5	71729,71730
1vpwA	340	87.27	a.35.1.5,c.93.1.1	17087,35680
2z08A	137	87.49