# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u04A 771 3.48e-40 b.34.14.1,c.55.3.10 107539,107540 1w9hA 427 1.24e-25 c.55.3.10 120785 1r4kA 169 3.73e-07 b.34.14.1 96997 1si2A 149 8.87e-06 b.34.14.1 105569 2qvwA 756 0.7295 1m64A 571 1.412 a.138.1.3,c.3.1.4,d.168.1.1 78683,78684,78685 1iyxA 432 1.457 c.1.11.1,d.54.1.1 83815,83816 1xfoA 357 4.966 b.49.3.1,c.56.5.4 115265,115266 1j7nA 776 6.550 d.92.1.14,d.92.1.14,d.166.1.1 66409,66410,66411 1k32A 1045 6.830 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2d73A 738 6.832 2v3aA 384 6.958 2oegA 505 7.487 1dpeA 507 8.541 c.94.1.1 35799 1zlqA 502 9.774 c.94.1.1 125253 1qh8B 519 10.93 c.92.2.3 35634 1uumA 372 11.33 c.1.4.1 100010 7a3hA 303 12.16 c.1.8.3 28817 1ji1A 637 13.59 b.1.18.2,b.71.1.1,c.1.8.1 71666,71667,71668 1gox 370 15.07 2as0A 396 15.92 b.122.1.9,c.66.1.51 127227,127228 1tvlA 454 16.19 c.1.16.4 107366 2b78A 385 16.27 b.122.1.9,c.66.1.51 128025,128026 1q7fA 286 16.31 b.68.9.1 96036 1xdwA 331 18.32 1itcA 516 18.49 b.3.1.1,c.1.8.1 83705,83706 1j8fA 323 18.63 c.31.1.5 62738 2ajfA 597 19.32 d.92.1.5 126882 1h70A 255 19.42 d.126.1.3 60711 1kl7A 514 19.43 c.79.1.1 72678 2a5hA 416 20.40 2i5gA 325 20.43 1evlA 401 21.15 c.51.1.1,d.104.1.1 33202,40751 1igrA 478 22.00 c.10.2.5,c.10.2.5,g.3.9.1 30877,30878,44188 2grvA 621 22.95 1y0yA 353 23.14 b.49.3.1,c.56.5.4 122514,122515 2pfsA 150 23.34 2dorA 311 23.36 c.1.4.1 28593 1icpA 376 24.90 c.1.4.1 62270 1el5A 389 25.26 c.3.1.2,d.16.1.3 30369,37937 1pnsB 234 25.99 i.1.1.1 88169 2al2A 436 26.38 c.1.11.1,d.54.1.1 126953,126954 3c6qA 311 27.92 1oaoA 674 28.49 e.26.1.2 86744 1h8eA 510 29.22 a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1f0xA 571 29.24 d.58.32.2,d.145.1.1 39483,41746 1ftrA 296 29.32 d.58.33.1,d.58.33.1 39485,39486 1vkpA 383 29.51 d.126.1.6 108686 1qguB 519 30.12 c.92.2.3 35626 1vdeA 454 30.44 b.86.1.2,d.95.2.2,d.95.2.2 28378,40581,40582 1jvnA 555 30.59 c.1.2.1,c.23.16.1 67355,67356 1pmd 675 31.71 1umwA 237 31.98 d.223.1.2,d.223.1.2 99631,99632 1sat 471 32.11 1r30A 369 32.18 c.1.28.1 96895 2jerA 389 32.20 1rthA 560 32.48 c.55.3.1,e.8.1.2 33576,43028 2rhsB 800 33.08 2pceA 386 33.52 2al1A 436 34.20 c.1.11.1,d.54.1.1 126949,126950 1nnt 328 35.36 2jhpA 644 36.40 1oneA 436 37.57 c.1.11.1,d.54.1.1 29200,38844 1hcuA 503 38.55 a.102.2.1 65796 1uqwA 509 39.60 c.94.1.1 99799 1dppA 507 39.62 c.94.1.1 35800 1ji2A 585 39.79 b.1.18.2,b.71.1.1,c.1.8.1 71672,71673,71674 1yc5A 246 39.91 c.31.1.5 122910 2bvfA 459 40.72 1wzlA 585 41.01 b.1.18.2,b.71.1.1,c.1.8.1 121513,121514,121515 1zp4A 304 42.40 1ffyA 917 42.46 a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 1x6vA 630 42.89 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1amy 403 43.64 1z5hA 780 44.61 1t1uA 639 45.09 c.43.1.3,c.43.1.3 119110,119111 2d5fA 493 45.54 1vypX 364 45.67 c.1.4.1 108905 1vj0A 380 45.68 b.35.1.2,c.2.1.1 100786,100787 2a1hA 365 45.97 e.17.1.1 125997 1acc 735 45.97 2nt0A 497 45.97 b.71.1.2,c.1.8.3 138561,138562 3bmvA 683 46.80 1rqbA 539 48.19 a.5.7.2,c.1.10.5 105057,105058 1m6bA 621 50.42 c.10.2.5,c.10.2.5,g.3.9.1,g.3.9.1 74521,74522,74523,74524 3bq5A 766 51.00 1xrsA 516 51.34 c.1.19.4 115883 1d3gA 367 52.12 c.1.4.1 28600 1v0eA 666 52.94 b.68.1.2,b.108.1.3 113466,113467 1g0uC 243 53.15 d.153.1.4 41948 1u3dA 509 53.47 a.99.1.1,c.28.1.1 107638,107639 3c86A 328 53.96 1qu2A 917 54.34 a.27.1.1,b.51.1.1,c.26.1.1 16925,26890,31592 1xknA 355 55.03 d.126.1.6 115414 1orvA 728 55.80 b.70.3.1,c.69.1.24 87354,87355 1jdw 423 56.19 2epgA 487 57.44 2ze0A 555 58.24 2vobA 652 60.16 1sc6A 404 60.45 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1e8cA 498 60.78 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1i8dA 213 61.11 b.43.4.3,b.43.4.3 61953,61954 1lstA 239 61.34 c.94.1.1 35755 1vbiA 344 62.37 2vj8A 611 63.48 1r53A 382 63.66 d.258.1.1 97063 2qvcA 313 64.74 1zj8A 566 65.51 1ma3A 253 65.64 c.31.1.5 78883 1frvB 536 69.89 e.18.1.1 43296 1l5jA 865 70.48 a.118.15.1,c.8.2.1,c.83.1.1 73592,73593,73594 1k6wA 426 70.57 b.92.1.2,c.1.9.5 68236,68237 1twdA 256 70.80 c.1.30.1 107397 1jakA 512 71.30 c.1.8.6,d.92.2.1 66472,66473 1fjgB 256 71.61 c.23.15.1 31400 1lst 239 73.10 1mroB 442 75.11 a.89.1.1,d.58.31.2 18531,39449 2fafA 608 75.96 1yw1A 442 78.46 c.1.16.4 124130 1xl7A 612 80.01 c.43.1.3,c.43.1.3 115438,115439 1vlyA 338 80.75 b.44.2.1,d.250.1.1 108871,108872 2akzA 439 80.96 c.1.11.1,d.54.1.1 126944,126945 1f8aB 167 80.97 b.72.1.1,d.26.1.1 27803,38432 1kuxA 207 81.25 d.108.1.1 73021 1b9zA 516 81.91 b.3.1.1,c.1.8.1 22528,28798 1fiy 883 82.23 2hpvA 208 82.55 1w0hA 204 82.94 c.55.3.5 114064 1zd3A 555 83.11 c.108.1.2,c.69.1.11 124930,124931 2cfmA 561 83.15 2ptzA 432 83.79 1lrzA 426 86.96 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169