# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	1.34e-36	b.34.14.1,c.55.3.10	107539,107540
1w9hA	427	6.71e-24	c.55.3.10	120785
1r4kA	169	3.57e-07	b.34.14.1	96997
1si2A	149	4.90e-06	b.34.14.1	105569
1h70A	255	7.153	d.126.1.3	60711
1el5A	389	11.35	c.3.1.2,d.16.1.3	30369,37937
3c6qA	311	18.44		
1qopB	396	26.31	c.79.1.1	35270
1pb7A	292	27.03	c.94.1.1	88025
1nnt	328	27.61		
1oaoA	674	32.06	e.26.1.2	86744
1zp4A	304	35.93		
1g0uC	243	39.70	d.153.1.4	41948
2qm1A	326	46.26		
1epuA	591	50.73	e.25.1.1	43358
2dxnA	274	51.45		
1q1lA	401	53.16	d.258.1.1	95591
2pfsA	150	53.40		
1xfoA	357	53.54	b.49.3.1,c.56.5.4	115265,115266
1w0hA	204	56.59	c.55.3.5	114064
1jqfA	334	56.89	c.94.1.2	67086
1es9A	232	59.54	c.23.10.3	31340
2i5gA	325	62.16		
1e5dA	402	62.74	c.23.5.1,d.157.1.3	31208,42061
1lstA	239	62.99	c.94.1.1	35755
3ladA	476	63.61	c.3.1.5,c.3.1.5,d.87.1.1	30573,30574,40208
1lst	239	63.86		
1pnsB	234	64.10	i.1.1.1	88169
1wkbA	810	66.01		
1dn1A	594	66.24	e.25.1.1	43357
1r30A	369	66.55	c.1.28.1	96895
2z08A	137	71.26		
2f5tX	233	72.84		
1jlvA	209	73.76	a.45.1.1,c.47.1.5	71729,71730
2f02A	323	75.37	c.72.1.1	132649
2q8zA	342	79.95		
1zpvA	91	80.32	d.58.18.7	125475
1shuX	182	80.88	c.62.1.1	98882
1z6rA	406	82.43	a.4.5.63,c.55.1.10,c.55.1.10	124557,124558,124559
1xvqA	175	83.71	c.47.1.10	116094
2qvcA	313	83.92		
1ma3A	253	88.36	c.31.1.5	78883
2g3kA	94	89.39	a.24.28.1	134562
1zi8A	236	89.47