# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	3.33e-56	b.34.14.1,c.55.3.10	107539,107540
1w9hA	427	1.16e-34	c.55.3.10	120785
1r4kA	169	9.75e-10	b.34.14.1	96997
1si2A	149	3.04e-07	b.34.14.1	105569
1ih7A	903	4.025	c.55.3.5,e.8.1.1	62375,62376
1h70A	255	4.601	d.126.1.3	60711
1el5A	389	5.086	c.3.1.2,d.16.1.3	30369,37937
1g0uC	243	8.464	d.153.1.4	41948
1xfoA	357	8.786	b.49.3.1,c.56.5.4	115265,115266
1pmd	675	10.81		
1nnt	328	12.52		
1zp4A	304	12.79		
1d0cA	444	17.40	d.174.1.1	64769
1ma3A	253	17.88	c.31.1.5	78883
2dxnA	274	19.95		
3ladA	476	27.07	c.3.1.5,c.3.1.5,d.87.1.1	30573,30574,40208
1pb7A	292	28.29	c.94.1.1	88025
2ze0A	555	38.14		
2nt0A	497	39.33	b.71.1.2,c.1.8.3	138561,138562
1oaoA	674	40.03	e.26.1.2	86744
1j8fA	323	40.71	c.31.1.5	62738
1yqeA	282	41.22	c.56.7.1	123879
1i8dA	213	41.37	b.43.4.3,b.43.4.3	61953,61954
1kzlA	208	41.82	b.43.4.3,b.43.4.3	77635,77636
1vpwA	340	42.80	a.35.1.5,c.93.1.1	17087,35680
2pz0A	252	44.26		
2e79A	108	46.79		
2dorA	311	48.78	c.1.4.1	28593
1es9A	232	50.82	c.23.10.3	31340
1jqfA	334	51.87	c.94.1.2	67086
2b4yA	271	57.55	c.31.1.5	127868
1clqA	903	62.63	c.55.3.5,e.8.1.1	33717,43006
3thiA	371	63.27	c.94.1.1	35792
2i5gA	325	63.98		
1vh0A	161	65.39	c.116.1.3	100626
1yc5A	246	66.18	c.31.1.5	122910
1om4A	422	66.50	d.174.1.1	87067
1r30A	369	66.99	c.1.28.1	96895
1b9zA	516	69.05	b.3.1.1,c.1.8.1	22528,28798
1uok	558	70.68		
1qguB	519	75.15	c.92.2.3	35626
1gtdA	85	77.95	d.284.1.1	76344
3byvA	377	78.07		
1kl7A	514	80.09	c.79.1.1	72678
1m7vA	363	82.51	d.174.1.1	78748
1w0hA	204	83.34	c.55.3.5	114064
2qm1A	326	83.54		
1ng6A	148	86.84	a.182.1.1	85670
1dn1A	594	89.80	e.25.1.1	43357