# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	2.23e-40	b.34.14.1,c.55.3.10	107539,107540
1w9hA	427	2.60e-26	c.55.3.10	120785
1r4kA	169	4.39e-08	b.34.14.1	96997
1si2A	149	2.55e-06	b.34.14.1	105569
1h70A	255	5.766	d.126.1.3	60711
1g0uC	243	7.891	d.153.1.4	41948
1nnt	328	9.355		
2dxnA	274	12.35		
1el5A	389	12.81	c.3.1.2,d.16.1.3	30369,37937
1pb7A	292	16.00	c.94.1.1	88025
1d0cA	444	21.71	d.174.1.1	64769
1dn1A	594	34.72	e.25.1.1	43357
1qopB	396	35.59	c.79.1.1	35270
1xfoA	357	35.78	b.49.3.1,c.56.5.4	115265,115266
2z08A	137	36.47		
1ih7A	903	37.33	c.55.3.5,e.8.1.1	62375,62376
1vpwA	340	38.59	a.35.1.5,c.93.1.1	17087,35680
3ladA	476	39.62	c.3.1.5,c.3.1.5,d.87.1.1	30573,30574,40208
1oaoA	674	42.91	e.26.1.2	86744
2bi7A	384	43.91		
1lstA	239	44.73	c.94.1.1	35755
1jqfA	334	44.75	c.94.1.2	67086
1zp4A	304	45.76		
1w0hA	204	45.98	c.55.3.5	114064
1yqeA	282	47.75	c.56.7.1	123879
2dorA	311	48.94	c.1.4.1	28593
1lst	239	50.77		
1e5dA	402	59.49	c.23.5.1,d.157.1.3	31208,42061
2qm1A	326	60.38		
2e79A	108	60.57		
2a8yA	270	67.77		
2nt0A	497	69.20	b.71.1.2,c.1.8.3	138561,138562
1gtdA	85	70.11	d.284.1.1	76344
1q1lA	401	71.89	d.258.1.1	95591
2j9uA	96	72.41	a.24.28.1	138155
3thiA	371	72.92	c.94.1.1	35792
1pnsB	234	72.98	i.1.1.1	88169
1ma3A	253	78.97	c.31.1.5	78883
3c6qA	311	80.20		
1rypC	244	80.31	d.153.1.4	41934
1wkbA	810	81.31		
1m6iA	493	81.63	c.3.1.5,c.3.1.5,d.87.1.1	74533,74534,74535
1es9A	232	81.71	c.23.10.3	31340
2v3aA	384	82.51		
2pfsA	150	87.88		
2g3kA	94	89.23	a.24.28.1	134562