# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	9.18e-46	b.34.14.1,c.55.3.10	107539,107540
1w9hA	427	3.37e-29	c.55.3.10	120785
1r4kA	169	9.78e-09	b.34.14.1	96997
1si2A	149	7.60e-07	b.34.14.1	105569
1el5A	389	3.928	c.3.1.2,d.16.1.3	30369,37937
1h70A	255	8.590	d.126.1.3	60711
2dxnA	274	9.461		
1nnt	328	10.82		
3ladA	476	16.02	c.3.1.5,c.3.1.5,d.87.1.1	30573,30574,40208
1zp4A	304	16.14		
1oaoA	674	16.81	e.26.1.2	86744
1ih7A	903	16.85	c.55.3.5,e.8.1.1	62375,62376
1xfoA	357	21.03	b.49.3.1,c.56.5.4	115265,115266
1pmd	675	21.06		
1pb7A	292	21.56	c.94.1.1	88025
1d0cA	444	22.17	d.174.1.1	64769
1g0uC	243	22.48	d.153.1.4	41948
2dorA	311	24.33	c.1.4.1	28593
1ma3A	253	24.54	c.31.1.5	78883
1w0hA	204	33.77	c.55.3.5	114064
2e79A	108	42.17		
3thiA	371	42.42	c.94.1.1	35792
1vpwA	340	50.22	a.35.1.5,c.93.1.1	17087,35680
2z08A	137	53.42		
2qm1A	326	54.53		
1zavA	180	54.60		
1jqfA	334	57.47	c.94.1.2	67086
2nt0A	497	58.28	b.71.1.2,c.1.8.3	138561,138562
1dn1A	594	60.41	e.25.1.1	43357
2yquA	455	61.43		
1lstA	239	62.81	c.94.1.1	35755
2g3kA	94	64.82	a.24.28.1	134562
1jubA	311	65.86	c.1.4.1	90908
1b9zA	516	66.34	b.3.1.1,c.1.8.1	22528,28798
1clqA	903	66.55	c.55.3.5,e.8.1.1	33717,43006
1lst	239	67.23		
1vb5A	276	67.80	c.124.1.5	113604
1qopB	396	69.01	c.79.1.1	35270
2ehbD	143	69.67		
2j9uA	96	72.47	a.24.28.1	138155
1epuA	591	72.81	e.25.1.1	43358
1es9A	232	74.83	c.23.10.3	31340
1ftrA	296	75.20	d.58.33.1,d.58.33.1	39485,39486
1y0yA	353	77.04	b.49.3.1,c.56.5.4	122514,122515
1e5dA	402	81.15	c.23.5.1,d.157.1.3	31208,42061
1om4A	422	85.48	d.174.1.1	87067
1yqeA	282	85.51	c.56.7.1	123879
1vh0A	161	86.64	c.116.1.3	100626
2i5gA	325	86.85		
2coiA	386	86.96		
2bi7A	384	89.28