# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u04A 771 1.39e-63 b.34.14.1,c.55.3.10 107539,107540 1w9hA 427 8.44e-41 c.55.3.10 120785 1r4kA 169 9.36e-10 b.34.14.1 96997 1si2A 149 1.22e-07 b.34.14.1 105569 2qm1A 326 2.299 1ckeA 227 4.455 c.37.1.1 31846 1z6rA 406 4.572 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 1glcG 501 5.141 c.55.1.4,c.55.1.4 33519,33520 2d4wA 504 10.11 2qr4A 587 10.15 1tvzA 388 12.82 c.95.1.2,c.95.1.2 107367,107368 1g0uE 234 13.33 d.153.1.4 41950 1pmaA 233 14.15 d.153.1.4 41918 1vh0A 161 14.15 c.116.1.3 100626 1ig8A 486 14.26 c.55.1.3,c.55.1.3 64746,64747 3c8cA 240 15.53 1rypG 244 16.51 d.153.1.4 41938 2z08A 137 16.66 1xpmA 396 16.91 c.95.1.2,c.95.1.2 115759,115760 1rypF 233 16.94 d.153.1.4 41937 1i2hA 168 18.21 b.55.1.4 71103 2al1A 436 19.35 c.1.11.1,d.54.1.1 126949,126950 2hoeA 380 19.59 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 3bghA 236 20.39 1rypC 244 20.65 d.153.1.4 41934 1r59O 505 21.71 c.55.1.4,c.55.1.4 111697,111698 1xpkC 388 22.10 c.95.1.2,c.95.1.2 115747,115748 1toaA 313 22.43 c.92.2.2 35598 5nul 138 24.25 1vl4A 447 26.59 d.283.1.1 108718 1e0tA 470 29.31 b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 1qumA 285 29.70 c.1.15.1 29393 1i6iA 366 32.40 c.37.1.9 61844 1umhA 184 32.47 b.18.1.21 99605 1rrmA 386 32.57 e.22.1.2 105081 1dk0A 188 35.21 d.35.1.1 38530 1yarA 233 36.40 d.153.1.4 122837 1g0uC 243 36.92 d.153.1.4 41948 1rypD 241 38.63 d.153.1.4 41935 1huxA 270 38.81 c.55.1.5 61278 1woqA 267 39.59 c.55.1.10,c.55.1.10 109462,109463 1xvqA 175 39.66 c.47.1.10 116094 2jx5A 69 40.95 1vkiA 181 42.50 d.116.1.1 108664 1rthA 560 46.72 c.55.3.1,e.8.1.2 33576,43028 2kinA 238 47.70 c.37.1.9 32190 4enl 436 51.63 1klnA 605 54.59 c.55.3.5,e.8.1.1 33693,42986 1bihA 395 55.38 b.1.1.4,b.1.1.4,b.1.1.4,b.1.1.4 21752,21753,21754,21755 1i9aA 182 56.42 d.113.1.2 62082 2nz7A 98 57.75 1nijA 318 59.13 c.37.1.10,d.237.1.1 85741,85742 2nnwA 376 61.49 1z8fA 228 63.99 2b4yA 271 64.99 c.31.1.5 127868 1ny1A 240 66.49 c.6.2.3 86395 1vgjA 184 67.37 1bu6O 501 67.40 c.55.1.4,c.55.1.4 33499,33500 1dpeA 507 68.28 c.94.1.1 35799 1wlyA 333 71.91 2ahjA 206 72.77 d.149.1.1 41772 1zkoA 136 72.86 2b7kA 200 73.61 c.47.1.10 128042 1oakA 196 73.84 c.62.1.1 34138 1wd6A 123 74.91 d.58.4.12 114525 1qh5A 260 78.25 d.157.1.2 42057 1rypB 250 78.98 d.153.1.4 41933 1nnt 328 79.20 1qtwA 285 79.32 c.1.15.1 29392 3c4hA 357 79.46 2fvgA 340 81.99 b.49.3.1,c.56.5.4 134201,134202 2pfsA 150 86.19 2kfnA 605 86.84 c.55.3.5,e.8.1.1 33682,42975 1tcrA 202 87.29 b.1.1.1,b.1.1.2 20605,21549 1ozjA 144 87.31 d.164.1.1 93846