# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u04A 771 5.18e-47 b.34.14.1,c.55.3.10 107539,107540 1w9hA 427 1.53e-30 c.55.3.10 120785 1r4kA 169 1.46e-07 b.34.14.1 96997 1si2A 149 3.50e-06 b.34.14.1 105569 2z08A 137 2.478 1h70A 255 4.041 d.126.1.3 60711 2pfsA 150 13.46 1glcG 501 14.38 c.55.1.4,c.55.1.4 33519,33520 1ma3A 253 15.13 c.31.1.5 78883 2qm1A 326 15.37 1z6rA 406 16.76 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 1gudA 288 17.03 c.93.1.1 83326 1rthA 560 17.22 c.55.3.1,e.8.1.2 33576,43028 2ve3A 444 18.00 1oakA 196 19.99 c.62.1.1 34138 1m6iA 493 21.94 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 1ckeA 227 23.97 c.37.1.1 31846 2cduA 452 30.70 2hoeA 380 30.87 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 1xpkC 388 32.06 c.95.1.2,c.95.1.2 115747,115748 1qh8A 478 32.06 c.92.2.3 35633 1shuX 182 33.44 c.62.1.1 98882 1xpmA 396 36.01 c.95.1.2,c.95.1.2 115759,115760 1e4fT 419 36.02 c.55.1.1,c.55.1.1 33453,33454 1gv4A 528 37.73 c.3.1.5,c.3.1.5,d.87.1.1 70589,70590,70591 1vh0A 161 39.55 c.116.1.3 100626 1yc5A 246 39.92 c.31.1.5 122910 1mzjA 339 41.82 c.95.1.2,c.95.1.2 79700,79701 1ordA 730 44.87 c.23.1.4,c.67.1.5,d.125.1.1 31274,34503,41124 1r1bA 59 47.35 a.16.1.3 16396 1huxA 270 51.94 c.55.1.5 61278 2p3rA 510 55.15 c.55.1.4,c.55.1.4 139471,139472 1mzyA 333 55.99 b.6.1.3,b.6.1.3 103848,103849 2dorA 311 56.11 c.1.4.1 28593 1tvzA 388 58.37 c.95.1.2,c.95.1.2 107367,107368 1u8sA 192 58.83 d.58.18.5,d.58.18.5 107737,107738 1nhsA 447 60.27 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1xvqA 175 61.16 c.47.1.10 116094 1wjgA 137 61.93 c.26.2.4 114696 2h6rA 219 62.73 1rypF 233 63.46 d.153.1.4 41937 1mioA 534 63.81 c.92.2.3 35601 1el5A 389 65.51 c.3.1.2,d.16.1.3 30369,37937 2pe3A 354 67.58 1d2mA 665 68.89 c.37.1.19,c.37.1.19 32417,32418 1woqA 267 70.39 c.55.1.10,c.55.1.10 109462,109463 1cruA 454 71.72 b.68.2.1 27617 1nhpA 447 72.34 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1zc6A 305 72.50 c.55.1.5,c.55.1.5 124888,124889 1mkzA 172 72.55 c.57.1.1 84998 1po5A 476 72.60 a.104.1.1 94963 1oygA 447 74.62 b.67.2.2 93726 1g0uE 234 76.41 d.153.1.4 41950 3c8cA 240 78.65 2a9gA 418 80.68 d.126.1.4 126435 1mgpA 313 85.53 c.119.1.1 79098 2ejqA 130 86.39 1pmaA 233 89.82 d.153.1.4 41918