# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u04A 771 1.93e-23 b.34.14.1,c.55.3.10 107539,107540 1w9hA 427 1.02e-13 c.55.3.10 120785 2c1iA 431 0.998 c.6.2.3,d.341.1.1 129636,129637 2c1gA 431 1.360 c.6.2.3,d.341.1.1 129632,129633 1k6wA 426 1.568 b.92.1.2,c.1.9.5 68236,68237 2dxnA 274 5.154 1rj9A 304 10.11 a.24.13.1,c.37.1.10 97553,97554 1vmaA 306 10.42 a.24.13.1,c.37.1.10 108887,108888 1wyuA 438 12.65 c.67.1.7 121452 1tufA 434 13.06 b.49.2.3,c.1.6.1 107335,107336 1si2A 149 14.77 b.34.14.1 105569 2amxA 376 15.36 c.1.9.1 127024 1yyaA 250 16.64 1c0aA 585 16.91 b.40.4.1,d.74.4.1,d.104.1.1 25246,39731,40767 1cs1A 386 18.75 c.67.1.3 34399 2fr1A 486 22.91 c.2.1.2,c.2.1.2 133961,133962 1ni9A 338 23.12 e.7.1.2 85739 1uumA 372 23.58 c.1.4.1 100010 1w0mA 226 24.82 c.1.1.1 109027 1h7xA 1025 25.47 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15687,28632,30328,30613,39011 2gokA 429 28.03 1twiA 434 28.39 b.49.2.3,c.1.6.1 107399,107400 1m7yA 435 28.96 c.67.1.4 78761 2b4yA 271 29.52 c.31.1.5 127868 1ax4A 467 29.99 c.67.1.2 34391 1hzpA 335 30.21 c.95.1.2,c.95.1.2 61455,61456 1f76A 336 30.22 c.1.4.1 76160 1mx0A 472 31.05 a.156.1.3,d.14.1.3,d.122.1.2 79618,79619,79620 1kl1A 419 31.53 c.67.1.4 72663 1tplA 426 32.55 c.67.1.2 34387 2ebdA 309 33.22 2d69A 430 33.25 c.1.14.1,d.58.9.1 131292,131293 1e8yA 966 33.66 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1wyuB 474 34.05 c.67.1.7 121453 2i9uA 439 34.81 1t6cA 315 35.22 c.55.1.8,c.55.1.8 106558,106559 2f02A 323 35.92 c.72.1.1 132649 2ffiA 288 36.06 c.1.9.15 133385 1yc5A 246 36.50 c.31.1.5 122910 1mzjA 339 36.56 c.95.1.2,c.95.1.2 79700,79701 2hkjA 469 37.95 a.156.1.3,d.14.1.3,d.122.1.2 136553,136554,136555 2j27A 250 38.26 1tpfA 250 38.31 c.1.1.1 28467 2jdxA 385 38.96 d.126.1.2 41139 1t5oA 351 39.08 c.124.1.5 106459 1jpnA 296 39.35 a.24.13.1,c.37.1.10 67039,67040 1zl0A 311 39.89 c.8.10.1,c.23.16.7 125231,125232 2jg1A 330 40.32 1aszB 490 40.79 b.40.4.1,d.104.1.1 25241,40762 2d4wA 504 41.83 1yjsA 419 41.99 c.67.1.4 123461 1gteA 1025 42.66 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 2fv7A 331 44.52 c.72.1.1 134197 2gptA 523 44.60 2aumA 317 44.77 c.8.10.1,c.23.16.7 127330,127331 1n55A 251 45.10 c.1.1.1 80007 2hjhA 354 45.44 2viaA 405 45.73 1kv5A 250 46.07 c.1.1.1 73052 1a4mA 349 46.92 c.1.9.1 29014 1dysA 348 48.72 c.6.1.1 30669 2hivA 621 49.66 1a49A 530 49.98 b.58.1.1,c.1.12.1,c.49.1.1 27026,29255,33109 2ez2A 456 50.31 1zzmA 259 51.16 c.1.9.12 125911 1b9bA 255 52.42 c.1.1.1 28531 2gsaA 432 53.30 c.67.1.4 34446 1mwsA 646 53.31 d.17.4.5,d.175.1.1,e.3.1.1 79592,79593,79594 3b9qA 302 53.45 1amk 251 53.60 1rxxA 421 53.96 d.126.1.4 98061 1rv3A 483 54.49 c.67.1.4 105101 1ng1 294 55.16 2vguA 407 55.27 1lylA 504 55.43 b.40.4.1,d.104.1.1 25261,40717 1d8wA 426 55.78 c.1.15.2 29394 2jhnA 295 56.84 1h7wA 1025 57.03 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 2cstA 411 57.41 c.67.1.1 34273 1yizA 429 59.43 c.67.1.1 123375 2og2A 359 62.35 2g50A 530 62.47 b.58.1.1,c.1.12.1,c.49.1.1 134618,134619,134620 1zcoA 262 62.71 1l0wA 580 62.72 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1rxwA 336 63.55 a.60.7.1,c.120.1.2 98059,98060 1igs 248 63.58 2eo5A 419 63.87 2puzA 419 64.12 2aunA 317 65.01 c.8.10.1,c.23.16.7 127334,127335 1bu6O 501 66.21 c.55.1.4,c.55.1.4 33499,33500 1b4eA 323 67.00 c.1.10.3 29186 1zd3A 555 67.31 c.108.1.2,c.69.1.11 124930,124931 1s9rA 410 68.72 d.126.1.4 98758 1pv9A 348 68.80 c.55.2.1,d.127.1.1 95157,95158 2aeuA 374 69.87 c.67.1.8 126646 2qm1A 326 71.61 1jvnA 555 72.69 c.1.2.1,c.23.16.1 67355,67356 1rkd 309 73.68 1l6sA 323 75.27 c.1.10.3 73627 1zrsA 317 75.62 c.8.10.1,c.23.16.7 125556,125557 1cwyA 500 75.82 c.1.8.1 28789 2hk0A 309 76.27 1o0yA 260 76.39 c.1.10.1 80756 1bx4A 345 76.99 c.72.1.1 34935 1tjyA 316 77.15 c.93.1.1 107062 1ra0A 430 77.23 b.92.1.2,c.1.9.5 111756,111757 1jx6A 342 78.54 c.93.1.1 67406 2pgfA 371 78.79 1rrvA 416 78.87 c.87.1.5 105083 1gk8A 475 78.98 c.1.14.1,d.58.9.1 65234,65235 1qo2A 241 79.02 c.1.2.1 28533 1vr5A 547 79.30 c.94.1.1 120437 2o7iA 592 80.43 2d59A 144 80.93 c.2.1.8 131266 1b8oA 284 81.49 c.56.2.1 33762 1vk3A 615 81.57 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 100846,100847,100848,100849 2h4tA 626 82.37 1g59A 468 82.49 a.97.1.1,c.26.1.1 60257,60258 2jerA 389 84.18 1c7sA 858 84.54 b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 1he2A 206 85.57 c.2.1.2 60966 1smd 496 85.64 2hp1A 432 89.42 1jcjA 260 89.51 c.1.10.1 66499 1c7gA 456 89.77 c.67.1.2 90415