# List of top-scoring protein chains for T0487.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yvuA 706 1.50e-31 b.34.14.1,c.55.3.10 124120,124121 1u04A 771 3.71e-27 b.34.14.1,c.55.3.10 107539,107540 1w9hA 427 1.80e-20 c.55.3.10 120785 1r4kA 169 6.89e-18 b.34.14.1 96997 1si2A 149 1.48e-16 b.34.14.1 105569 1vynA 143 7.24e-08 b.34.14.1 108904 1t2rA 123 7.10e-06 b.34.14.1 106286 1r6zA 509 5.60e-05 b.34.14.1,c.94.1.1 97169,97170 2qvwA 756 0.002334 2hjhA 354 1.937 2qk1A 249 4.974 1rt8A 513 7.963 a.40.1.1 105095 1eu8A 409 9.339 c.94.1.1 59502 1infA 390 10.99 b.68.1.1 27602 3c5mA 396 11.33 2du7A 549 13.09 2v7cA 194 16.87 2otdA 247 21.81 3bjuA 521 22.14 1ybeA 449 25.34 c.1.17.2,d.41.2.2 116605,116606 1ddzA 496 29.76 c.53.2.1,c.53.2.1 33372,33373 1vcjA 389 32.11 b.68.1.1 100559 1b9vA 390 32.40 b.68.1.1 27603 2v0vA 194 32.84 1h2vC 771 35.02 a.118.1.14,a.118.1.14,a.118.1.14 76592,76593,76594 1em8B 112 35.36 c.126.1.1 90458 1booA 323 35.70 c.66.1.11 34248 2odrB 648 42.19 1xgdA 315 42.61 2odrA 665 43.05 2csbA 519 43.44 a.60.2.4,a.60.2.4,a.60.2.4,a.60.2.4,a.267.1.1 130751,130752,130753,130754,130755 2v7kA 361 44.15 2odrD 685 44.47 2odrC 701 44.70 1az1A 315 45.31 c.1.7.1 28677 2nvlA 250 48.01 1nyrA 645 48.41 c.51.1.1,d.15.10.1,d.67.1.1,d.104.1.1 92354,92355,92356,92357 2zctA 249 48.60 2r9vA 515 49.56 2c2vC 142 51.26 d.20.1.1 129687 2qyuA 627 51.84 1z3nA 319 52.18 c.1.7.1 124411 2pdiA 316 52.88 1abnA 315 53.27 c.1.7.1 28683 2qzaA 618 54.16 2agtA 319 54.37 1n52A 790 54.53 a.118.1.14,a.118.1.14,a.118.1.14 79999,80000,80001 2ajuH 219 54.73 1us0A 316 55.19 c.1.7.1 99850 1el3A 316 56.36 c.1.7.1 28672 2pdlA 316 56.48 2pdpA 316 57.17 2pdhA 316 57.54 1adsA 315 57.81 c.1.7.1 28671 1x1pA 212 57.93 c.55.3.1 121594 2pduA 316 58.10 1xrhA 351 59.37 c.122.1.1 115871 1rrvA 416 59.42 c.87.1.5 105083 2rliA 171 60.34 1gpwA 253 60.64 c.1.2.1 65460 2pdyA 316 61.09 2pd9A 316 61.27 1vr5A 547 61.70 c.94.1.1 120437 1szrA 425 62.33 b.49.2.3,c.1.6.1 112174,112175 1xh9A 350 62.47 2acuA 315 63.43 c.1.7.1 28676 1j8yF 297 63.71 a.24.13.1,c.37.1.10 62747,62748 2i4lA 458 64.44 2is7A 315 68.32 2q9uA 414 68.58 1oxzA 186 69.14 a.7.8.1 87542 2cv4A 250 70.49 c.47.1.10 130837 1iqcA 308 71.10 a.3.1.5,a.3.1.5 66266,66267 1ivyA 452 71.36 c.69.1.5 34654 2b2xA 223 71.71 c.62.1.1 127748 2dfeA 209 72.39 1vh7A 265 73.37 c.1.2.1 100646 1bf6A 291 73.55 c.1.9.3 29065 1x87A 551 75.32 e.51.1.1 114956 1thfD 253 76.44 c.1.2.1 28535 1j8mF 297 76.62 a.24.13.1,c.37.1.10 62742,62743 1njjA 425 77.64 b.49.2.3,c.1.6.1 91905,91906 2it1A 362 77.71 2z5tM 140 79.61 2owmA 443 80.81 1irxA 523 81.33 a.97.1.2,c.26.1.1 71378,71379 2depA 356 81.66 1rcuA 195 81.92 c.129.1.1 97295 1f3tA 425 82.12 b.49.2.3,c.1.6.1 26493,28655 1o5wA 534 83.64 c.3.1.2,d.16.1.5 92520,92521 1rfmA 344 84.33 c.122.1.1 97385 2yxlA 450 85.28 1h6kA 757 87.74 a.118.1.14,a.118.1.14,a.118.1.14 60675,60676,60677 3ct9A 356 88.38 2pdbA 316 89.05 1uliA 460 89.24 b.33.1.2,d.129.3.3 107921,107922 1smhA 350 89.48 d.144.1.7 105757