# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u04A 771 5.42e-74 b.34.14.1,c.55.3.10 107539,107540 1w9hA 427 5.04e-53 c.55.3.10 120785 1si2A 149 7.40e-13 b.34.14.1 105569 2qvwA 756 0.001225 1jx6A 342 0.07257 c.93.1.1 67406 1rj9A 304 0.2211 a.24.13.1,c.37.1.10 97553,97554 2qh9A 184 0.4129 2og2A 359 0.9668 1zxxA 319 1.053 2qy9A 309 1.414 3b9qA 302 1.619 2fqxA 318 1.632 2hqbA 296 1.749 1u4nA 310 2.874 c.69.1.2 113021 2i7vA 459 3.932 2jayA 291 6.030 1sjiA 350 6.999 2db3A 434 7.352 1jyeA 349 7.848 c.93.1.1 67455 1rtqA 299 8.102 c.56.5.4 97819 2qh8A 302 8.210 2qu8A 228 8.270 1jndA 420 9.208 c.1.8.5,d.26.3.1 71757,71758 1r9jA 673 9.361 c.36.1.6,c.36.1.10,c.48.1.1 111722,111723,111724 1vbuA 328 10.33 c.1.8.3 119963 2i1qA 322 11.02 a.60.4.1,c.37.1.11 136984,136985 2qvcA 313 11.46 1vheA 373 11.55 b.49.3.1,c.56.5.4 100669,100670 1nqkA 381 11.85 c.1.16.4 92050 1z15A 344 12.46 1usgA 346 12.86 c.93.1.1 99864 1gudA 288 13.22 c.93.1.1 83326 1rhcA 330 13.80 c.1.16.3 97468 1f07A 321 14.44 c.1.16.3 59560 1ezwA 349 14.48 c.1.16.3 29558 1mkzA 172 15.05 c.57.1.1 84998 1gveA 327 15.81 c.1.7.1 70597 1yloA 348 16.00 b.49.3.1,c.56.5.4 123659,123660 2g2cA 167 16.20 c.57.1.1 134535 1dbqA 289 16.66 c.93.1.1 35666 1rypD 241 17.54 d.153.1.4 41935 8abp 306 18.21 1bg4A 302 18.37 c.1.8.3 28806 2gdjA 264 18.71 c.37.1.11 135018 2fvyA 309 18.75 c.93.1.1 134227 1vicA 262 20.13 c.68.1.13 100756 8abpA 306 20.40 c.93.1.1 35647 2i4iA 417 20.48 2b81A 323 22.05 2g8lA 299 22.49 e.50.1.1 134775 5nul 138 22.59 1q77A 138 23.57 c.26.2.4 96023 1r8eA 278 23.79 a.6.1.3,d.60.1.1 104843,104844 2vafA 378 25.81 2q9oA 559 27.43 2i4lA 458 28.14 2ooqA 286 28.35 1a8yA 367 28.41 c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 2glfA 450 28.64 1jyoA 130 28.85 d.198.1.1 67483 2z2uA 311 30.17 3canA 182 30.19 1hgxA 183 30.50 c.61.1.1 34027 1tjyA 316 31.19 c.93.1.1 107062 1s5pA 235 31.36 c.31.1.5 98569 2qu7A 288 31.77 1edg 380 31.99 2h3hA 313 34.59 1dpeA 507 35.50 c.94.1.1 35799 3d0cA 314 36.12 1sqgA 429 36.26 a.79.1.3,c.66.1.38 105912,105913 1lucA 355 36.31 c.1.16.1 29547 3d02A 303 36.33 1zc6A 305 36.46 c.55.1.5,c.55.1.5 124888,124889 2csuA 457 36.49 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1bykA 255 36.79 c.93.1.1 35706 2fliA 220 36.83 c.1.2.2 133714 1rvv1 154 39.76 2r8wA 332 40.66 2d0bA 310 40.92 1ni9A 338 41.47 e.7.1.2 85739 2z08A 137 42.89 3bm1A 183 43.19 2c4wA 176 43.23 2qtzA 539 43.49 1cfr 285 45.25 1z7gA 217 45.73 c.61.1.1 124624 1q1aA 289 46.37 c.31.1.5 95561 1evlA 401 48.56 c.51.1.1,d.104.1.1 33202,40751 2pjkA 178 49.58 1n82A 331 50.10 c.1.8.3 91703 2fvgA 340 50.91 b.49.3.1,c.56.5.4 134201,134202 1pea 385 50.92 1s9rA 410 51.63 d.126.1.4 98758 1y5eA 169 53.08 c.57.1.1 122632 3c6qA 311 53.45 2e18A 257 54.13 2r8oA 669 54.21 1qopA 268 56.37 c.1.2.4 28570 2b61A 377 57.33 2pvaA 345 57.56 d.153.1.3 41850 3bchA 253 57.60 3c5iA 369 58.44 1a3c 181 59.36 2bjbA 462 60.63 2dx6A 159 60.82 1a8y 367 62.75 1xjdA 345 63.93 d.144.1.7 115388 2f5tX 233 63.95 2qsfA 533 64.58 2v9dA 343 64.92 2higA 487 66.72 1vgyA 393 69.86 c.56.5.4,d.58.19.1 100620,100621 1kcfA 258 70.14 a.140.2.1,c.55.3.7 68434,68435 2rjoA 332 72.61 1xpkC 388 73.60 c.95.1.2,c.95.1.2 115747,115748 2dkoA 146 74.20 1sw5B 275 76.16 c.94.1.1 106070 2o0tA 467 76.30 1xzoA 174 77.38 c.47.1.10 122474 3bl6A 230 77.93 1l6rA 227 78.21 c.108.1.10 77768 2g4rA 160 78.61 2h8eA 120 80.03 1lqaA 346 80.15 c.1.7.1 84674 1hqkA 154 80.26 c.16.1.1 65902 1zceA 155 80.99 b.122.1.8 124907 2aaxA 275 81.11 1gpuA 680 81.16 c.36.1.10,c.36.1.6,c.48.1.1 65454,65455,65456 1m1nB 522 82.87 c.92.2.3 78418 3brcA 156 83.02 2b4yA 271 84.12 c.31.1.5 127868 1ufaA 520 84.80 a.8.3.3,c.6.2.4 99329,99330 1bkrA 109 86.08 a.40.1.1 17394 2h3gX 268 86.28 1np7A 489 86.64 a.99.1.1,c.28.1.1 80677,80678 2f4mA 295 87.84 2ih8A 559 87.88 b.6.1.3,b.6.1.3,b.6.1.3 137407,137408,137409 2dri 271 88.96