# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u04A 771 1.19e-71 b.34.14.1,c.55.3.10 107539,107540 1w9hA 427 2.91e-51 c.55.3.10 120785 1si2A 149 4.92e-13 b.34.14.1 105569 2qvwA 756 0.000429 1jx6A 342 0.03268 c.93.1.1 67406 1rj9A 304 0.5701 a.24.13.1,c.37.1.10 97553,97554 2hqbA 296 0.8181 1zxxA 319 0.8600 2qh9A 184 1.000 2og2A 359 1.058 2fqxA 318 1.637 2qy9A 309 3.194 3b9qA 302 3.585 2qu8A 228 4.660 2gdjA 264 5.645 c.37.1.11 135018 1r9jA 673 5.676 c.36.1.6,c.36.1.10,c.48.1.1 111722,111723,111724 1vbuA 328 7.296 c.1.8.3 119963 2i1qA 322 8.681 a.60.4.1,c.37.1.11 136984,136985 1gudA 288 9.277 c.93.1.1 83326 1rypD 241 10.02 d.153.1.4 41935 2db3A 434 10.80 2i7vA 459 10.99 1f07A 321 11.12 c.1.16.3 59560 2qvcA 313 12.67 8abp 306 13.55 1dpeA 507 15.08 c.94.1.1 35799 1mkzA 172 15.99 c.57.1.1 84998 1q77A 138 16.24 c.26.2.4 96023 8abpA 306 17.15 c.93.1.1 35647 2z2uA 311 17.46 2jayA 291 17.56 1jyeA 349 17.81 c.93.1.1 67455 1jndA 420 17.98 c.1.8.5,d.26.3.1 71757,71758 2fvyA 309 18.21 c.93.1.1 134227 1yloA 348 19.21 b.49.3.1,c.56.5.4 123659,123660 1tjyA 316 19.29 c.93.1.1 107062 1vheA 373 19.78 b.49.3.1,c.56.5.4 100669,100670 2g2cA 167 20.08 c.57.1.1 134535 2i4lA 458 20.20 1u4nA 310 20.50 c.69.1.2 113021 1nqkA 381 20.87 c.1.16.4 92050 2ooqA 286 21.62 2fliA 220 21.82 c.1.2.2 133714 2vafA 378 22.31 1sjiA 350 22.95 2g8lA 299 24.53 e.50.1.1 134775 2a6zA 222 25.07 b.29.1.13 126319 1gveA 327 25.71 c.1.7.1 70597 1bg4A 302 26.03 c.1.8.3 28806 2qh8A 302 26.96 2pvaA 345 28.82 d.153.1.3 41850 2ii3A 262 29.67 2i4iA 417 30.04 2glfA 450 31.38 1usgA 346 33.75 c.93.1.1 99864 1vicA 262 35.89 c.68.1.13 100756 1ezwA 349 35.95 c.1.16.3 29558 2d0bA 310 36.08 1cfr 285 36.78 2qu7A 288 37.19 3bchA 253 37.27 3canA 182 37.68 1rypE 242 37.70 d.153.1.4 41936 1g0uC 243 37.79 d.153.1.4 41948 1booA 323 38.04 c.66.1.11 34248 1edg 380 40.39 5nul 138 42.57 1gpuA 680 42.75 c.36.1.10,c.36.1.6,c.48.1.1 65454,65455,65456 2csuA 457 42.90 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1rtqA 299 43.10 c.56.5.4 97819 1ig8A 486 44.15 c.55.1.3,c.55.1.3 64746,64747 2a97A 439 44.53 1rhcA 330 44.68 c.1.16.3 97468 2fvgA 340 45.14 b.49.3.1,c.56.5.4 134201,134202 2purA 292 45.81 1dbqA 289 45.87 c.93.1.1 35666 1gg4A 452 46.58 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 1r8eA 278 47.25 a.6.1.3,d.60.1.1 104843,104844 1xzoA 174 47.86 c.47.1.10 122474 2pjkA 178 48.34 1rvv1 154 48.60 2b81A 323 50.06 2f5tX 233 51.72 2r8oA 669 53.03 1hgxA 183 53.67 c.61.1.1 34027 1s9rA 410 55.18 d.126.1.4 98758 1ug0A 88 55.45 a.217.1.1 107822 2b61A 377 56.90 1lucA 355 58.00 c.1.16.1 29547 1a3c 181 58.32 1edgA 380 58.90 c.1.8.3 28807 2dri 271 60.58 1n82A 331 60.77 c.1.8.3 91703 1a8yA 367 62.25 c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 2b4yA 271 62.53 c.31.1.5 127868 1y5eA 169 62.83 c.57.1.1 122632 2g4rA 160 63.97 1jljA 189 65.84 c.57.1.1 63169 1gakA 141 66.24 a.19.1.1 16415 1mmqA 170 67.57 d.92.1.11 40396 1v4sA 455 69.78 c.55.1.3,c.55.1.3 100309,100310 2higA 487 70.09 1pea 385 70.34 2c4wA 176 70.58 2qxfA 482 70.70 2q4wA 524 71.18 1lucB 324 71.76 c.1.16.1 29548 3c6qA 311 71.83 1jyoA 130 72.04 d.198.1.1 67483 3ch3X 265 72.71 1bkrA 109 73.19 a.40.1.1 17394 1gca 309 74.76 2h9aB 310 75.45 2cmwA 310 75.95 1k8kF 168 76.32 d.198.2.1 68312 3d02A 303 76.85 2r5nA 669 77.20 3bm1A 183 77.27 1kcfA 258 78.43 a.140.2.1,c.55.3.7 68434,68435 1c3pA 375 78.96 c.42.1.2 32606 1rypF 233 79.43 d.153.1.4 41937 1fxoA 293 79.58 c.68.1.6 34524 1zc6A 305 79.67 c.55.1.5,c.55.1.5 124888,124889 1bdmA 327 79.73 c.2.1.5,d.162.1.1 30137,42104 1xjdA 345 81.33 d.144.1.7 115388 1dusA 194 82.93 c.66.1.4 34182 1bykA 255 83.52 c.93.1.1 35706 1vrvA 101 84.60 2r8wA 332 85.46 1vgyA 393 86.04 c.56.5.4,d.58.19.1 100620,100621 2gk6A 624 86.81 2rjoA 332 87.51