# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u04A 771 5.74e-70 b.34.14.1,c.55.3.10 107539,107540 1w9hA 427 6.73e-51 c.55.3.10 120785 1si2A 149 1.25e-12 b.34.14.1 105569 2qvwA 756 0.005263 1jx6A 342 0.1277 c.93.1.1 67406 1rypD 241 0.4576 d.153.1.4 41935 1rj9A 304 0.7110 a.24.13.1,c.37.1.10 97553,97554 1jyeA 349 0.7820 c.93.1.1 67455 2qh9A 184 1.219 3b9qA 302 1.317 2og2A 359 1.393 2fqxA 318 1.553 8abpA 306 1.775 c.93.1.1 35647 8abp 306 1.811 2hqbA 296 1.956 1zxxA 319 2.149 1usgA 346 2.309 c.93.1.1 99864 1dbqA 289 3.553 c.93.1.1 35666 1vicA 262 3.607 c.68.1.13 100756 1sjiA 350 4.119 1r8eA 278 4.133 a.6.1.3,d.60.1.1 104843,104844 1u4nA 310 4.164 c.69.1.2 113021 2fvyA 309 4.176 c.93.1.1 134227 2qu7A 288 5.371 1rypE 242 6.754 d.153.1.4 41936 1g0uC 243 7.176 d.153.1.4 41948 1qopA 268 7.681 c.1.2.4 28570 3d02A 303 8.275 1dpeA 507 8.439 c.94.1.1 35799 2qy9A 309 8.787 1q77A 138 10.71 c.26.2.4 96023 1r9jA 673 10.74 c.36.1.6,c.36.1.10,c.48.1.1 111722,111723,111724 2dri 271 11.25 2c4wA 176 11.30 2db3A 434 11.39 2qvcA 313 12.13 2i4lA 458 12.22 1gudA 288 12.66 c.93.1.1 83326 1yloA 348 13.30 b.49.3.1,c.56.5.4 123659,123660 1rtqA 299 13.32 c.56.5.4 97819 1bykA 255 13.43 c.93.1.1 35706 1qwjA 229 14.06 c.68.1.13 96478 3canA 182 15.34 2qh8A 302 15.82 2o20A 332 16.65 2i1qA 322 17.60 a.60.4.1,c.37.1.11 136984,136985 1xzoA 174 18.71 c.47.1.10 122474 1vbuA 328 18.75 c.1.8.3 119963 1pea 385 19.27 1gpuA 680 20.16 c.36.1.10,c.36.1.6,c.48.1.1 65454,65455,65456 5nul 138 20.25 1gz0A 253 20.78 c.116.1.1,d.79.3.3 76391,76392 1a8yA 367 21.84 c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 2pt7A 330 21.84 1lzlA 323 22.33 c.69.1.2 78306 1rvv1 154 22.46 2p8tA 200 22.96 1jndA 420 23.65 c.1.8.5,d.26.3.1 71757,71758 2v9dA 343 24.74 2fliA 220 24.86 c.1.2.2 133714 1tjyA 316 24.91 c.93.1.1 107062 2h3hA 313 24.93 1sqgA 429 24.99 a.79.1.3,c.66.1.38 105912,105913 1fxoA 293 25.26 c.68.1.6 34524 1wvqA 167 25.87 1cfr 285 27.07 1gca 309 27.39 1f07A 321 28.97 c.1.16.3 59560 1g6oA 330 29.06 c.37.1.11 32430 1rhcA 330 29.52 c.1.16.3 97468 2ioyA 283 29.99 3bchA 253 30.01 2glfA 450 30.08 1yarA 233 30.78 d.153.1.4 122837 3bv0A 437 31.08 1z15A 344 31.10 3bxpA 277 32.30 1ezwA 349 32.96 c.1.16.3 29558 2purA 292 33.57 2a8yA 270 34.90 1vheA 373 35.09 b.49.3.1,c.56.5.4 100669,100670 2z2uA 311 35.46 1k7cA 233 35.98 c.23.10.4 68267 2jayA 291 36.54 2qu8A 228 37.70 1eejA 216 37.87 c.47.1.9,d.17.3.1 33057,38071 3bl6A 230 37.96 1lstA 239 38.39 c.94.1.1 35755 2h8eA 120 39.19 1bg4A 302 39.25 c.1.8.3 28806 1l6rA 227 39.26 c.108.1.10 77768 2z08A 137 39.47 2vh1A 220 39.74 2gy9C 206 40.80 2gdjA 264 40.94 c.37.1.11 135018 1vgyA 393 42.90 c.56.5.4,d.58.19.1 100620,100621 2qwxA 231 43.22 1f9aA 168 44.64 c.26.1.3 31602 2r8wA 332 45.05 1f74A 293 45.91 c.1.10.1 29079 2ax4A 198 46.24 1vgjA 184 48.41 2e18A 257 48.44 2a6zA 222 52.40 b.29.1.13 126319 2driA 271 52.69 c.93.1.1 35637 1yzfA 195 53.06 c.23.10.5 124275 3d0cA 314 53.55 2yvuA 186 53.94 1rypG 244 54.96 d.153.1.4 41938 1edg 380 55.02 2csuA 457 55.54 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2rebA 352 55.58 c.37.1.11,d.48.1.1 32282,38767 2fn9A 290 56.29 1mkzA 172 56.63 c.57.1.1 84998 1qhfA 240 56.88 c.60.1.1 33960 1t5iA 172 57.34 c.37.1.19 106450 1yqhA 109 57.44 d.58.48.1 123886 2gxaA 274 59.77 2d0bA 310 59.99 2p8eA 307 60.09 2gk4A 232 60.55 2g2cA 167 61.16 c.57.1.1 134535 1twiA 434 62.40 b.49.2.3,c.1.6.1 107399,107400 2ehhA 294 62.42 2r91A 286 63.78 2z0mA 337 63.79 2r8oA 669 63.92 2hq2A 354 64.03 e.62.1.1 136656 2ii3A 262 64.94 1uqrA 154 66.12 c.23.13.1 99779 1nqkA 381 66.48 c.1.16.4 92050 2pl5A 366 67.21 1evlA 401 67.22 c.51.1.1,d.104.1.1 33202,40751 2b4yA 271 67.24 c.31.1.5 127868 2ikqA 270 67.32 1d5yA 292 68.25 a.4.1.8,a.4.1.8,d.60.1.2 16055,16056,39532 2pezA 179 70.21 1o5kA 306 70.94 c.1.10.1 92504 1jyoA 130 71.10 d.198.1.1 67483 1uwvA 433 71.35 b.40.4.12,c.66.1.40 100128,100129 2qv7A 337 72.72 1tq8A 163 73.19 c.26.2.4 107204 1bowA 159 73.51 d.60.1.1 39528 2vafA 378 73.86 1rypF 233 74.66 d.153.1.4 41937 1mk4A 157 75.00 d.108.1.1 84979 2atsA 292 75.22 c.1.10.1 127306 2q7sA 290 76.26 1uf3A 228 76.32 d.159.1.6 99317 1rypC 244 77.16 d.153.1.4 41934 1xdzA 240 77.43 c.66.1.20 115196 2vc6A 292 77.58 2aaxA 275 77.71 1ni9A 338 78.01 e.7.1.2 85739 1vhwA 253 78.06 c.56.2.1 100706 1yioA 208 79.67 a.4.6.2,c.23.1.1 123326,123327 2q4wA 524 80.26 2b61A 377 81.28 1ceoA 343 83.74 c.1.8.3 28808 2g0wA 296 84.20 c.1.15.4 134503 1k8kF 168 84.42 d.198.2.1 68312 3bilA 348 84.58 2f06A 144 84.93 d.58.18.11,d.58.18.11 132652,132653 1g0uD 241 86.41 d.153.1.4 41949 2yvqA 143 86.70 1ep3A 311 86.98 c.1.4.1 28597 2qm0A 275 87.62 2d16A 162 88.26 2j0pA 345 88.55 e.62.1.1 137903 1mkmA 249 88.95 a.4.5.33,d.110.2.2 79242,79243 1jftA 340 89.13 a.35.1.5,c.93.1.1 66652,66653 1zceA 155 89.96 b.122.1.8 124907